Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2121

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10488 and 10489 are separated by 483 nucleotides mRNA_2120: 10488 - Hypothetical Protein, at 119,780 to 121,101 10488 mRNA_2121: 10489 - K17991 PXG peroxygenase, at 121,585 to 123,428 10489

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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120,636 - 10488 mRNA_2120 0.65 -0.7
120,766 + 10488 mRNA_2120 0.75 +1.9
120,781 - 10488 mRNA_2120 0.76 -0.3
120,785 - 10488 mRNA_2120 0.76 +0.4
120,786 + 10488 mRNA_2120 0.76 +0.9
120,790 + 10488 mRNA_2120 0.76 +0.4
120,795 - 10488 mRNA_2120 0.77 -0.7
120,798 - 10488 mRNA_2120 0.77 +0.0
120,798 + 10488 mRNA_2120 0.77 +0.1
120,799 - 10488 mRNA_2120 0.77 +0.6
120,799 - 10488 mRNA_2120 0.77 -1.2
120,803 + 10488 mRNA_2120 0.77 +0.7
120,805 - 10488 mRNA_2120 0.78 +0.3
120,806 + 10488 mRNA_2120 0.78 +1.0
120,807 - 10488 mRNA_2120 0.78 +0.4
120,808 + 10488 mRNA_2120 0.78 +0.8
120,810 + 10488 mRNA_2120 0.78 -0.3
121,088 + -2.4
121,091 + -0.2
121,202 + +2.3
121,231 - -1.6
121,238 + +0.3
121,263 + -1.4
121,354 + -0.6
121,555 - -0.2
121,676 + -0.6
121,686 + +0.7
121,708 - +2.0
121,714 - -0.9
121,835 - 10489 mRNA_2121 0.14 +0.1
121,982 + 10489 mRNA_2121 0.22 -0.6
122,132 - 10489 mRNA_2121 0.30 -1.5
122,136 - 10489 mRNA_2121 0.30 +2.7
122,139 - 10489 mRNA_2121 0.30 -0.9
122,316 + 10489 mRNA_2121 0.40 +0.5
123,150 + 10489 mRNA_2121 0.85 +2.1
123,150 + 10489 mRNA_2121 0.85 +0.7
123,300 + +0.3
123,314 - +0.8
123,321 + +0.4
123,328 - +2.7
123,328 - +1.0
123,334 - +1.5
123,457 + -0.1
123,468 - +1.6
123,475 + -0.1
123,477 - +0.4
123,484 + +0.3
123,485 - +1.7
123,486 - -1.2
123,490 - -2.0
123,491 + +1.5
123,493 + -0.6
123,502 - +0.8
123,507 + +0.6
123,522 - -1.0
123,528 - +1.8
123,540 + +0.5
123,540 - -0.1
123,682 - +0.3
123,717 - -0.5
124,108 + +1.1
124,117 - +1.6
124,255 + -0.4
124,265 + -0.9
124,279 - +0.3
124,381 + +0.4
124,390 + +2.0
124,393 - -0.2
124,414 + -0.7
124,417 - -0.0
124,419 + -0.2
124,421 + +0.5
124,422 + +0.3
124,423 + -0.5

Or see this region's nucleotide sequence