Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2142

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10510 and 10511 are separated by 347 nucleotides mRNA_2142: 10510 - Hypothetical Protein, at 179,044 to 180,564 10510 mRNA_2143: 10511 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 180,912 to 181,824 10511

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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178,189 + -1.2
178,428 - -0.1
178,468 - +1.9
178,518 - -0.9
178,934 + +0.9
178,936 - +2.2
179,026 + -0.4
179,027 - +0.9
179,150 - +2.0
179,150 - +0.3
179,342 + 10510 mRNA_2142 0.20 -0.7
179,344 - 10510 mRNA_2142 0.20 +0.4
179,373 - 10510 mRNA_2142 0.22 +0.1
179,373 - 10510 mRNA_2142 0.22 +0.4
179,787 - 10510 mRNA_2142 0.49 -0.5
180,045 - 10510 mRNA_2142 0.66 -0.9
180,054 + 10510 mRNA_2142 0.66 +0.6
180,093 + 10510 mRNA_2142 0.69 +2.5
180,201 - 10510 mRNA_2142 0.76 +1.0
180,327 - 10510 mRNA_2142 0.84 -0.7
180,932 + +0.7
180,977 - +2.8
180,981 - +0.6
181,178 - 10511 mRNA_2143 0.29 -0.6
181,179 - 10511 mRNA_2143 0.29 +0.5
181,185 + 10511 mRNA_2143 0.30 +0.1
181,197 - 10511 mRNA_2143 0.31 +0.9
181,215 - 10511 mRNA_2143 0.33 -1.2
181,254 - 10511 mRNA_2143 0.37 +0.0
181,309 + 10511 mRNA_2143 0.43 -1.3
181,315 + 10511 mRNA_2143 0.44 -0.5
181,323 + 10511 mRNA_2143 0.45 +0.4
181,332 - 10511 mRNA_2143 0.46 -1.1
181,394 - 10511 mRNA_2143 0.53 +1.7

Or see this region's nucleotide sequence