Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2148

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10515 and 10516 are separated by 120 nucleotides10516 and 10517 are separated by 124 nucleotides mRNA_2147: 10515 - K01719 hemD, UROS uroporphyrinogen-III synthase, at 187,353 to 188,300 10515 mRNA_2148: 10516 - KOG2490 Predicted membrane protein, at 188,421 to 191,027 10516 mRNA_2149: 10517 - K12948 SPCS3, SPC3 signal peptidase complex subunit 3, at 191,152 to 191,850 10517

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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188,309 + -0.1
188,392 + -0.6
188,393 + -0.4
188,675 + +2.6
189,740 + 10516 mRNA_2148 0.51 -1.8
189,923 - 10516 mRNA_2148 0.58 -2.3
189,965 - 10516 mRNA_2148 0.59 +0.1
189,986 - 10516 mRNA_2148 0.60 +2.8
190,052 + 10516 mRNA_2148 0.63 +0.4
190,282 - 10516 mRNA_2148 0.71 +0.4
190,398 + 10516 mRNA_2148 0.76 -2.4
190,539 - 10516 mRNA_2148 0.81 -1.6
190,595 + 10516 mRNA_2148 0.83 -1.4
190,760 + 10516 mRNA_2148 0.90 -1.5
190,853 + -0.4
190,891 + -0.2
191,024 - +0.5
191,042 + -0.0
191,043 + +1.9
191,056 - -0.8
191,132 - -0.5
191,205 + +1.1

Or see this region's nucleotide sequence