Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2186

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10554 and 10555 are separated by 371 nucleotides mRNA_2186: 10554 - K06316 RFT1 oligosaccharide translocation protein RFT1, at 289,914 to 291,585 10554 mRNA_2187: 10555 - K09602 OTUB1 ubiquitin thioesterase protein OTUB1, at 291,957 to 293,217 10555

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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288,919 + +0.1
289,047 + +3.8
289,195 - +1.3
289,201 - +1.4
289,214 + +0.3
289,220 - +0.2
289,224 - -0.1
289,334 - +1.0
289,353 - +0.1
289,354 + -1.1
289,363 + +0.9
289,368 + -0.3
289,371 + +0.5
289,375 + +0.9
289,471 - +0.3
289,473 + +1.1
289,502 - +1.5
289,625 - -1.1
289,649 + -0.1
289,810 - +0.2
291,673 + -0.0
291,697 - +0.7
291,712 + +1.8
291,714 - -0.1
291,838 + -0.9
291,858 + +0.1
292,132 - 10555 mRNA_2187 0.14 -0.2

Or see this region's nucleotide sequence