Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2191

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10558 and 10559 are separated by 841 nucleotides10559 and 10560 are separated by 220 nucleotides mRNA_2190: 10558 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 301,262 to 303,174 10558 mRNA_2191: 10559 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 304,016 to 306,697 10559 mRNA_2192: 10560 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 306,918 to 310,071 10560

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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303,371 - -2.2
303,387 + +0.6
303,532 - +1.5
303,691 - +0.3
303,692 - +0.4
303,822 + +0.3
303,955 - -0.4
304,101 + +0.3
304,221 + -0.7
304,459 - 10559 mRNA_2191 0.17 -0.4
304,530 + 10559 mRNA_2191 0.19 -0.7
304,696 - 10559 mRNA_2191 0.25 +2.1
304,721 - 10559 mRNA_2191 0.26 +0.1
304,943 + 10559 mRNA_2191 0.35 +1.3
304,971 - 10559 mRNA_2191 0.36 +1.4
304,976 + 10559 mRNA_2191 0.36 -1.1
304,978 + 10559 mRNA_2191 0.36 -1.6
305,082 - 10559 mRNA_2191 0.40 -0.3
305,113 + 10559 mRNA_2191 0.41 +0.7
305,170 - 10559 mRNA_2191 0.43 -0.1
305,248 + 10559 mRNA_2191 0.46 +0.8
305,547 + 10559 mRNA_2191 0.57 -0.0
305,563 - 10559 mRNA_2191 0.58 +0.2
305,831 - 10559 mRNA_2191 0.68 -0.9
305,857 + 10559 mRNA_2191 0.69 +2.2
305,953 - 10559 mRNA_2191 0.72 +1.9
305,988 + 10559 mRNA_2191 0.74 +0.9
306,001 + 10559 mRNA_2191 0.74 +1.4
306,142 - 10559 mRNA_2191 0.79 -1.2
306,160 + 10559 mRNA_2191 0.80 -0.6
306,167 + 10559 mRNA_2191 0.80 -0.4
306,695 + +0.7
306,742 + -0.5
306,859 - +0.6
306,866 - +1.8
307,164 + +0.8

Or see this region's nucleotide sequence