Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2198

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10565 and 10566 are separated by 641 nucleotides10566 and 10567 are separated by 591 nucleotides mRNA_2197: 10565 - K20042 FCHO F-BAR domain only protein, at 326,896 to 330,044 10565 mRNA_2198: 10566 - Hypothetical Protein, at 330,686 to 331,336 10566 mRNA_2199: 10567 - K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6, at 331,928 to 335,323 10567

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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329,735 + +0.4
329,863 - +0.5
330,001 - +0.2
330,433 - +1.5
330,435 - +0.8
330,440 + +0.4
330,601 - +2.0
330,766 - 10566 mRNA_2198 0.12 +0.1
330,916 - 10566 mRNA_2198 0.35 +1.1
331,495 + -0.7
331,812 - -0.3
332,053 - +0.7
332,206 + -0.4
332,244 + +0.4

Or see this region's nucleotide sequence