Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2272

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10638 and 10639 overlap by 2 nucleotides10639 and 10640 are separated by 461 nucleotides10640 and 10641 are separated by 442 nucleotides mRNA_2270: 10638 - K19833 CLA4 serine/threonine-protein kinase CLA4, at 492,259 to 494,809 10638 mRNA_2271: 10639 - Hypothetical Protein, at 494,808 to 495,275 10639 mRNA_2272: 10640 - Hypothetical Protein, at 495,737 to 495,928 10640 mRNA_2273: 10641 - K14787 MRD1, RBM19 multiple RNA-binding domain-containing protein 1, at 496,371 to 499,098 10641

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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494,848 + +0.4
494,855 - 10639 mRNA_2271 0.10 +1.8
494,855 - 10639 mRNA_2271 0.10 +1.5
494,857 + 10639 mRNA_2271 0.10 +0.5
494,858 + 10639 mRNA_2271 0.11 +2.3
494,880 - 10639 mRNA_2271 0.15 -2.6
494,906 - 10639 mRNA_2271 0.21 -0.8
494,986 + 10639 mRNA_2271 0.38 +0.1
495,001 + 10639 mRNA_2271 0.41 +0.1
495,006 + 10639 mRNA_2271 0.42 +0.9
495,007 - 10639 mRNA_2271 0.43 +2.5
495,033 - 10639 mRNA_2271 0.48 +0.4
495,044 + 10639 mRNA_2271 0.50 -0.6
495,155 - 10639 mRNA_2271 0.74 -0.2
495,160 - 10639 mRNA_2271 0.75 +1.8
496,054 - -0.2
496,056 - -1.0
496,361 + -2.5

Or see this region's nucleotide sequence