Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2276

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10643 and 10644 are separated by 298 nucleotides10644 and 10645 are separated by 216 nucleotides mRNA_2275: 10643 - HMMPfam-MAPEG family-PF01124,SUPERFAMILY--SSF161084, at 500,597 to 501,422 10643 mRNA_2276: 10644 - K02954 RP-S14, MRPS14, rpsN small subunit ribosomal protein S14, at 501,721 to 502,247 10644 mRNA_2277: 10645 - K13717 OTUD3 OTU domain-containing protein 3, at 502,464 to 504,545 10645

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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500,835 - 10643 mRNA_2275 0.29 -0.1
500,986 - 10643 mRNA_2275 0.47 -0.0
501,124 + 10643 mRNA_2275 0.64 -0.2
501,377 + +0.2
502,297 - +1.9
502,300 + -0.7
502,301 + +0.3
502,310 + -1.0
502,311 - +0.2
502,416 + -0.8
502,422 + -0.7
502,437 - -1.5
502,438 - +4.3
502,441 + -1.8
502,443 + +1.9
502,445 + +0.3
502,446 - +1.2
502,446 - -0.5
502,497 - +0.7
502,593 - +0.6
502,610 - -0.1
502,612 - +2.1
502,612 - -0.4
502,625 + +1.4
502,713 - 10645 mRNA_2277 0.12 +2.3
502,731 - 10645 mRNA_2277 0.13 +0.6
502,737 + 10645 mRNA_2277 0.13 -0.6
502,743 + 10645 mRNA_2277 0.13 -0.8
502,850 + 10645 mRNA_2277 0.19 +0.3

Or see this region's nucleotide sequence