Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2304

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10671 and 10672 are separated by 388 nucleotides10672 and 10673 are separated by 218 nucleotides mRNA_2303: 10671 - Hypothetical Protein, at 565,712 to 566,657 10671 mRNA_2304: 10672 - Hypothetical Protein, at 567,046 to 568,484 10672 mRNA_2305: 10673 - K01082 cysQ, MET22, BPNT1 3'(2'), 5'-bisphosphate nucleotidase, at 568,703 to 570,355 10673

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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566,216 + 10671 mRNA_2303 0.53 +0.6
566,359 + 10671 mRNA_2303 0.68 +0.7
566,486 - 10671 mRNA_2303 0.82 +1.6
566,630 + +0.3
566,763 - -0.5
566,765 - +1.7
566,765 - +2.1
566,891 - +0.4
567,210 - 10672 mRNA_2304 0.11 +1.6
567,228 - 10672 mRNA_2304 0.13 +1.7
567,358 - 10672 mRNA_2304 0.22 +1.3
567,513 + 10672 mRNA_2304 0.32 +2.3
567,526 + 10672 mRNA_2304 0.33 -0.6
567,962 - 10672 mRNA_2304 0.64 -0.6
568,234 + 10672 mRNA_2304 0.83 -3.1
568,266 - 10672 mRNA_2304 0.85 -2.4
568,269 + 10672 mRNA_2304 0.85 +1.9
568,381 + +1.0
568,390 + +0.0
568,391 - -0.0
568,398 - +0.6
568,399 + +0.4
568,405 - -0.3
568,406 + -0.3
568,415 + +1.9
568,418 + -1.3
568,441 + +3.8
568,561 + +0.7
568,582 - +0.6
568,586 - +0.2
568,586 - -1.3
568,599 + -2.2
568,606 - -0.3
568,615 + -0.5
568,619 - -0.1
568,712 - +0.8

Or see this region's nucleotide sequence