Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2307

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10674 and 10675 are separated by 426 nucleotides10675 and 10676 are separated by 217 nucleotides mRNA_2306: 10674 - HMMPfam-ATP synthase complex subunit h-PF10775, at 570,737 to 571,864 10674 mRNA_2307: 10675 - HMMPfam-Mitochondrial ATPase inhibitor, IATP-PF04568,SUPERFAMILY--SSF64602, at 572,291 to 573,066 10675 mRNA_2308: 10676 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 573,284 to 575,347 10676

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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571,899 + -0.3
571,916 - -0.6
571,919 - -0.3
571,920 - +1.3
571,922 + +0.6
571,930 - +0.8
572,085 - -2.2
572,087 + +0.1
572,090 + +1.9
572,090 + -1.5
572,099 - +0.1
572,100 - +0.1
572,103 - +0.1
572,104 - -0.7
572,105 + +0.8
572,106 + -0.0
572,106 + -2.2
572,109 + +0.8
572,227 + +0.5
572,228 + +0.3
572,230 - +0.8
572,232 + +0.7
572,241 + +0.8
572,256 - +0.0
572,291 + +1.2
572,363 + +2.2
572,416 + 10675 mRNA_2307 0.16 +3.3
572,417 + 10675 mRNA_2307 0.16 +0.4
572,421 - 10675 mRNA_2307 0.17 -0.4
572,423 - 10675 mRNA_2307 0.17 +1.8
572,431 - 10675 mRNA_2307 0.18 +1.0
572,441 + 10675 mRNA_2307 0.19 -0.0
572,449 + 10675 mRNA_2307 0.20 +0.3
572,469 + 10675 mRNA_2307 0.23 -2.1
572,666 - 10675 mRNA_2307 0.48 +0.7
572,800 + 10675 mRNA_2307 0.66 -0.1
572,979 - 10675 mRNA_2307 0.89 -0.4
573,011 - +1.4
573,132 + +0.4
573,138 - +0.4
573,138 + -0.2
573,178 + +1.1
573,180 - +3.1
573,181 + -1.4
573,183 + +0.9
573,189 + +1.0
573,189 + -0.8
573,192 - +0.9
573,196 - +1.0
573,198 - +0.2
573,198 + +0.9
573,199 + -0.2
573,203 - +2.0
573,206 + +1.4
573,212 + -0.3
573,214 - -0.2
573,220 - +2.9
573,230 + +2.0
573,233 + -1.1
573,236 - -0.2
573,236 + +0.4
573,248 - +0.5
573,338 - +1.7
573,346 - -0.9
573,363 + +1.1
573,373 - -0.9
573,376 + -0.0
573,487 - +1.3
573,496 - 10676 mRNA_2308 0.10 +3.1
573,501 - 10676 mRNA_2308 0.11 +0.8
573,506 - 10676 mRNA_2308 0.11 +1.2
573,519 + 10676 mRNA_2308 0.11 +0.0
573,600 - 10676 mRNA_2308 0.15 +1.8
573,665 - 10676 mRNA_2308 0.18 +0.4

Or see this region's nucleotide sequence