Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2317

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10684 and 10685 are separated by 745 nucleotides10685 and 10686 are separated by 353 nucleotides mRNA_2316: 10684 - K02889 RP-L21e, RPL21 large subunit ribosomal protein L21e, at 591,341 to 591,961 10684 mRNA_2317: 10685 - K02264 COX5A cytochrome c oxidase subunit 5a, at 592,707 to 594,114 10685 mRNA_2318: 10686 - HMMPfam-Bromodomain associated-PF07524,HMMPfam-Transcription factor TFIID complex subunit 8 C-term-PF10406, at 594,468 to 595,983 10686

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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592,167 + +0.8
592,192 - +0.2
592,196 - -2.0
592,322 + -0.3
592,615 - -0.8
592,618 + +0.2
592,624 - +0.3
592,624 + +1.2
592,626 + +0.1
592,630 - -0.5
592,642 - -0.4
592,647 - +0.3
592,658 + +1.8
592,670 - -0.5
592,970 - 10685 mRNA_2317 0.19 +0.0
593,484 - 10685 mRNA_2317 0.55 +1.7
594,239 - +0.2
594,265 - -0.5
594,295 + +0.5

Or see this region's nucleotide sequence