Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2319

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10686 and 10687 are separated by 147 nucleotides mRNA_2318: 10686 - HMMPfam-Bromodomain associated-PF07524,HMMPfam-Transcription factor TFIID complex subunit 8 C-term-PF10406, at 594,468 to 595,983 10686 mRNA_2319: 10687 - KOG3872 FOG FHA domain, at 596,131 to 598,966 10687

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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596,067 - -0.3
596,084 - -0.1
596,100 - +0.6
596,234 + +0.6
596,241 + -0.2
596,242 + -0.2
596,365 - +1.6
596,389 + +0.5
596,533 + 10687 mRNA_2319 0.14 +0.9
596,538 - 10687 mRNA_2319 0.14 +0.5
596,681 + 10687 mRNA_2319 0.19 +0.2
596,997 + 10687 mRNA_2319 0.31 +0.2
597,131 - 10687 mRNA_2319 0.35 +0.2
597,308 - 10687 mRNA_2319 0.42 -0.6
598,702 - -1.9
598,726 + +0.8
598,877 + +0.5
599,148 - -1.0
599,154 - +1.3
599,154 + +0.6
599,178 - +1.2
599,316 - +0.4
599,317 + +1.7
599,321 - +1.8
599,463 - -0.1
599,868 - +0.4
599,890 + -0.4
599,902 - -0.0
599,905 + -0.4
599,909 + +0.8

Or see this region's nucleotide sequence