Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2329

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2329: 10697 - K10908 POLRMT, RPO41 DNA-directed RNA polymerase, mitochondrial, at 622,463 to 626,733 10697

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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621,465 - +1.6
621,465 - -0.2
621,473 - +1.7
621,481 + -0.5
621,614 - -0.1
621,629 + -0.2
621,752 + +0.8
621,760 + -2.7
621,766 - +0.0
621,784 - -0.7
621,787 - -0.3
621,788 + +0.2
621,903 - -0.2
621,913 - -0.7
621,917 - -2.2
622,055 - +0.8
622,064 - +0.5
622,068 - +2.1
622,071 + +1.6
622,078 + -0.4
622,210 + -0.5
622,217 - +0.6
626,888 - +2.4
626,891 - +0.2
626,996 + +0.2
627,025 - +1.4
627,030 + -0.4
627,054 + +0.3
627,172 - +1.4
627,172 + -0.3
627,189 + +0.1
627,196 - -0.5
627,213 - +1.5
627,312 - +2.7
627,324 + +0.4
627,353 - +1.8
627,373 + +3.0
627,379 + +0.4
627,487 - +0.4
627,508 + -0.4
627,609 - -0.6
627,648 + -0.6
627,665 + +1.2
627,665 + +0.8
627,683 - -0.8

Or see this region's nucleotide sequence