Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2346

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10713 and 10714 are separated by 724 nucleotides10714 and 10715 are separated by 378 nucleotides mRNA_2345: 10713 - KOG1399 Flavin-containing monooxygenase, at 672,144 to 674,998 10713 mRNA_2346: 10714 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 675,723 to 677,238 10714 mRNA_2347: 10715 - K09207 KLF6_7 krueppel-like factor 6/7, at 677,617 to 679,955 10715

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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675,136 + +0.6
675,291 + +0.7
675,617 - -0.1
676,320 + 10714 mRNA_2346 0.39 +0.1
676,724 - 10714 mRNA_2346 0.66 +1.9
676,836 - 10714 mRNA_2346 0.73 +1.5
676,851 + 10714 mRNA_2346 0.74 -0.5
677,005 - 10714 mRNA_2346 0.85 +2.1
677,034 - 10714 mRNA_2346 0.86 +0.4
677,034 - 10714 mRNA_2346 0.86 +0.9
677,312 - -0.0
677,322 - +0.7
677,333 + +0.6
677,341 + +2.5
677,365 + -0.3
677,485 - +0.1
677,499 - -0.4
677,655 - +0.4
677,830 + -0.5

Or see this region's nucleotide sequence