Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2355

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10722 and 10723 are separated by 67 nucleotides10723 and 10724 are separated by 857 nucleotides mRNA_2354: 10722 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 692,257 to 694,787 10722 mRNA_2355: 10723 - Hypothetical Protein, at 694,855 to 695,610 10723 mRNA_2356: 10724 - Hypothetical Protein, at 696,468 to 697,388 10724

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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693,922 - 10722 mRNA_2354 0.66 -0.5
694,058 - 10722 mRNA_2354 0.71 -0.1
694,223 - 10722 mRNA_2354 0.78 +2.4
694,326 + 10722 mRNA_2354 0.82 +0.1
694,345 - 10722 mRNA_2354 0.82 -1.3
695,221 - 10723 mRNA_2355 0.48 +0.8
695,657 - -0.6
695,808 - +0.6
695,958 - +0.7
695,961 + +2.7
695,967 - -0.4
695,970 - -0.6
695,971 + -0.5
696,136 + -0.1

Or see this region's nucleotide sequence