Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2389

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10756 and 10757 are separated by 900 nucleotides10757 and 10758 are separated by 709 nucleotides mRNA_2388: 10756 - K14781 DHR2 ATP-dependent RNA helicase DHR2, at 595 to 3,686 10756 mRNA_2389: 10757 - K10901 BLM, RECQL3, SGS1 bloom syndrome protein, at 4,587 to 7,344 10757 mRNA_2390: 10758 - Hypothetical Protein, at 8,054 to 9,276 10758

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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3,782 + +0.5
3,821 + -0.7
4,050 - -0.4
4,089 - +0.4
4,160 + +0.1
4,163 - -0.1
4,185 + +0.2
4,250 - -0.8
4,312 + +3.5
4,543 - +0.5
4,544 + +0.9
4,693 + +2.2
4,810 + +0.1
4,816 + +0.7
4,819 - +0.0
4,819 - +1.3
4,879 - 10757 mRNA_2389 0.11 +0.7
4,889 + 10757 mRNA_2389 0.11 -3.0
5,047 + 10757 mRNA_2389 0.17 -0.2
5,047 + 10757 mRNA_2389 0.17 -0.8
5,075 + 10757 mRNA_2389 0.18 +0.3
5,231 - 10757 mRNA_2389 0.23 -2.2
5,267 + 10757 mRNA_2389 0.25 +3.3
5,306 - 10757 mRNA_2389 0.26 -0.8
5,336 - 10757 mRNA_2389 0.27 +1.4
5,390 + 10757 mRNA_2389 0.29 +0.5
5,391 - 10757 mRNA_2389 0.29 +0.6
5,432 + 10757 mRNA_2389 0.31 +1.1
5,488 - 10757 mRNA_2389 0.33 -1.1
5,494 + 10757 mRNA_2389 0.33 +0.6
5,510 - 10757 mRNA_2389 0.33 -0.8
5,519 + 10757 mRNA_2389 0.34 -0.2
5,561 - 10757 mRNA_2389 0.35 +0.0
5,666 - 10757 mRNA_2389 0.39 -0.1
5,920 - 10757 mRNA_2389 0.48 +0.3
5,952 + 10757 mRNA_2389 0.49 +1.5
5,990 + 10757 mRNA_2389 0.51 +1.1
6,227 + 10757 mRNA_2389 0.59 +1.3
6,238 - 10757 mRNA_2389 0.60 -0.1
6,249 + 10757 mRNA_2389 0.60 -2.5
6,388 + 10757 mRNA_2389 0.65 +1.3
6,419 + 10757 mRNA_2389 0.66 -0.6
6,546 - 10757 mRNA_2389 0.71 +1.1
6,553 + 10757 mRNA_2389 0.71 -0.9
6,660 + 10757 mRNA_2389 0.75 +0.4
6,713 + 10757 mRNA_2389 0.77 +1.2
6,938 - 10757 mRNA_2389 0.85 +1.6
6,962 + 10757 mRNA_2389 0.86 +0.2
7,171 - +0.2
7,187 - +0.8
7,191 + -0.2
7,214 + +0.6
7,310 + +2.6
7,337 + -2.7
7,360 + +1.3
7,820 - +0.1

Or see this region's nucleotide sequence