Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2405

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10773 and 10774 are separated by 709 nucleotides mRNA_2405: 10773 - KOG1910 Uncharacterized conserved protein, at 41,181 to 51,337 10773 mRNA_2406: 10774 - KOG4111 Translocase of outer mitochondrial membrane complex, subunit TOM22, at 52,047 to 52,986 10774

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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40,281 - +1.1
40,456 + +0.6
40,475 + +1.3
40,614 - +0.2
40,741 - -2.1
40,754 - +0.3
40,765 + +1.2
40,767 - +1.1
40,782 - +1.0
40,786 + +0.8
40,807 - +1.5
40,813 + -1.0
40,815 + +0.7
40,883 - +0.2
40,913 - +0.5
40,962 + +0.4
41,050 + -1.3
41,087 - +0.7
41,090 + +0.7
41,108 + -1.6
41,128 + -0.6
41,210 - +1.1
41,248 - +1.5
41,395 + +1.2
41,408 + +1.1
41,704 + +0.3
41,854 - +1.3
41,983 + -2.2
42,008 - +0.5
42,286 - 10773 mRNA_2405 0.11 +1.2
42,295 - 10773 mRNA_2405 0.11 +2.0
42,437 - 10773 mRNA_2405 0.12 +0.0
42,560 - 10773 mRNA_2405 0.14 +0.7
42,745 + 10773 mRNA_2405 0.15 +0.1
42,757 - 10773 mRNA_2405 0.16 +0.5
43,054 - 10773 mRNA_2405 0.18 +0.8
43,129 - 10773 mRNA_2405 0.19 +0.3
43,135 + 10773 mRNA_2405 0.19 -0.0
43,435 - 10773 mRNA_2405 0.22 +1.8
43,439 + 10773 mRNA_2405 0.22 +2.0
43,465 - 10773 mRNA_2405 0.22 +1.0
43,548 - 10773 mRNA_2405 0.23 +0.3
43,639 - 10773 mRNA_2405 0.24 +0.3
43,698 - 10773 mRNA_2405 0.25 +0.7
43,737 - 10773 mRNA_2405 0.25 -0.6
43,770 - 10773 mRNA_2405 0.25 +2.1
43,851 + 10773 mRNA_2405 0.26 +1.5
43,891 + 10773 mRNA_2405 0.27 -0.1
43,891 + 10773 mRNA_2405 0.27 -0.8
44,284 + 10773 mRNA_2405 0.31 -1.0
44,293 + 10773 mRNA_2405 0.31 +0.3
44,312 - 10773 mRNA_2405 0.31 -0.5
44,318 - 10773 mRNA_2405 0.31 +0.7
44,327 - 10773 mRNA_2405 0.31 +0.6
44,343 + 10773 mRNA_2405 0.31 +0.2
44,417 - 10773 mRNA_2405 0.32 -3.7
44,471 + 10773 mRNA_2405 0.32 +0.5
44,648 - 10773 mRNA_2405 0.34 +0.2
44,748 - 10773 mRNA_2405 0.35 +2.1
44,887 + 10773 mRNA_2405 0.36 +2.9
44,954 + 10773 mRNA_2405 0.37 +0.4
44,993 - 10773 mRNA_2405 0.38 -0.2
45,052 - 10773 mRNA_2405 0.38 -0.6
45,067 - 10773 mRNA_2405 0.38 +1.0
45,159 - 10773 mRNA_2405 0.39 +0.3
45,232 - 10773 mRNA_2405 0.40 +0.5
45,243 + 10773 mRNA_2405 0.40 +0.2
45,280 - 10773 mRNA_2405 0.40 -0.1
45,676 - 10773 mRNA_2405 0.44 +1.1
45,774 - 10773 mRNA_2405 0.45 +0.8
45,789 + 10773 mRNA_2405 0.45 -0.6
45,879 - 10773 mRNA_2405 0.46 -0.8
45,942 + 10773 mRNA_2405 0.47 +1.1
45,960 - 10773 mRNA_2405 0.47 +1.6
46,009 - 10773 mRNA_2405 0.48 -0.4
46,074 + 10773 mRNA_2405 0.48 +0.7
46,082 - 10773 mRNA_2405 0.48 +0.6
46,308 - 10773 mRNA_2405 0.50 +0.7
46,315 - 10773 mRNA_2405 0.51 +0.9
46,656 + 10773 mRNA_2405 0.54 +0.5
46,792 - 10773 mRNA_2405 0.55 +0.0
46,795 + 10773 mRNA_2405 0.55 +0.3
46,805 + 10773 mRNA_2405 0.55 -1.0
46,816 + 10773 mRNA_2405 0.55 -1.5
47,100 + 10773 mRNA_2405 0.58 +0.0
47,186 + 10773 mRNA_2405 0.59 +3.4
47,196 + 10773 mRNA_2405 0.59 -0.3
47,324 - 10773 mRNA_2405 0.60 +0.8
47,338 + 10773 mRNA_2405 0.61 -0.1
47,450 - 10773 mRNA_2405 0.62 +1.1
47,486 - 10773 mRNA_2405 0.62 +0.1
47,631 - 10773 mRNA_2405 0.64 +0.8
47,639 - 10773 mRNA_2405 0.64 +0.8
47,655 + 10773 mRNA_2405 0.64 -0.4
47,895 - 10773 mRNA_2405 0.66 +0.9
47,898 + 10773 mRNA_2405 0.66 +2.9
47,949 - 10773 mRNA_2405 0.67 -0.1
47,999 + 10773 mRNA_2405 0.67 +0.1
48,026 + 10773 mRNA_2405 0.67 +0.6
48,153 - 10773 mRNA_2405 0.69 +0.4
48,314 + 10773 mRNA_2405 0.70 +0.4
48,834 - 10773 mRNA_2405 0.75 +0.8
48,843 + 10773 mRNA_2405 0.75 +0.4
48,963 + 10773 mRNA_2405 0.77 -0.9
49,153 - 10773 mRNA_2405 0.78 -0.0
49,253 - 10773 mRNA_2405 0.79 +1.2
49,273 + 10773 mRNA_2405 0.80 +2.7
49,729 + 10773 mRNA_2405 0.84 +2.6
49,931 - 10773 mRNA_2405 0.86 -0.6
49,936 + 10773 mRNA_2405 0.86 -1.7
50,062 + 10773 mRNA_2405 0.87 -0.3
50,185 + 10773 mRNA_2405 0.89 +0.2
50,284 - 10773 mRNA_2405 0.90 +0.6
50,528 - -0.2
50,537 + +0.1
50,697 - -0.2
50,708 - -0.2
50,716 + -0.1
51,127 + +0.9
51,127 + -0.0
51,270 + +0.3
51,387 - +0.2
51,393 - -0.4
51,397 + +1.7
51,419 - -0.3
51,421 - -0.4
51,531 - -0.7
51,564 + +0.6
51,567 + +1.3
51,712 - -0.6
51,933 - +2.9
51,976 + +0.1
52,120 - -1.0

Or see this region's nucleotide sequence