Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2408

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10775 and 10776 are separated by 228 nucleotides10776 and 10777 are separated by 84 nucleotides mRNA_2407: 10775 - K10880 XRCC3 DNA-repair protein XRCC3, at 53,086 to 55,006 10775 mRNA_2408: 10776 - K07975 K07975 Rho family, other, at 55,235 to 56,824 10776 mRNA_2409: 10777 - Hypothetical Protein, at 56,909 to 58,334 10777

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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54,324 - 10775 mRNA_2407 0.64 -0.7
55,274 - +0.3
55,304 + +1.6
55,597 - 10776 mRNA_2408 0.23 +0.1
55,740 + 10776 mRNA_2408 0.32 +0.0
56,154 + 10776 mRNA_2408 0.58 +1.8
56,323 + 10776 mRNA_2408 0.68 -2.0
56,374 - 10776 mRNA_2408 0.72 +2.1
56,393 + 10776 mRNA_2408 0.73 +0.3
56,410 - 10776 mRNA_2408 0.74 +1.7
56,503 + 10776 mRNA_2408 0.80 -1.2
56,511 - 10776 mRNA_2408 0.80 +3.9
56,652 - 10776 mRNA_2408 0.89 +2.3
56,763 + +0.3
56,764 + +1.0
56,792 - -0.0
56,927 - -1.3
56,941 - +0.3
56,953 + +0.1
57,091 + 10777 mRNA_2409 0.13 +1.6
57,101 + 10777 mRNA_2409 0.13 +3.3
57,130 - 10777 mRNA_2409 0.15 -1.9
57,384 + 10777 mRNA_2409 0.33 -0.9
57,701 + 10777 mRNA_2409 0.56 -0.8

Or see this region's nucleotide sequence