Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2413

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10780 and 10781 are separated by 476 nucleotides mRNA_2412: 10780 - K04378 SRF serum response factor, at 62,318 to 64,458 10780 mRNA_2413: 10781 - K13108 SNIP1 smad nuclear-interacting protein 1, at 64,935 to 66,206 10781

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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63,989 - 10780 mRNA_2412 0.78 -1.4
64,275 + -0.8
64,299 - -0.6
64,712 + +1.3
64,722 - +2.2
64,768 - -0.7
64,880 + -0.5
64,899 - +0.3
64,899 + -0.6
64,900 + +1.0
64,902 - +1.4
64,902 + +0.9
64,913 + -0.6
64,928 + -0.8
66,237 - -0.7
66,594 - +1.4
66,603 - +0.7
66,880 + +2.0
66,911 + +1.5
67,040 - +0.9
67,080 + +0.0
67,168 - -0.2
67,170 - -1.4
67,175 + +0.1
67,186 + -0.8

Or see this region's nucleotide sequence