Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2435

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10802 and 10803 are separated by 967 nucleotides10803 and 10804 are separated by 276 nucleotides mRNA_2434: 10802 - HMMPfam-ATP synthase subunit H-PF05493, at 119,507 to 119,841 10802 mRNA_2435: 10803 - Hypothetical Protein, at 120,809 to 121,330 10803 mRNA_2436: 10804 - KOG0254 Predicted transporter (major facilitator superfamily), at 121,607 to 125,074 10804

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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119,955 - -1.4
119,976 + -0.6
120,100 - +0.4
120,135 + -0.1
120,258 - +0.1
120,274 + +0.6
120,398 + +1.7
120,577 + +0.1
120,683 - +1.3
120,725 + -0.3
120,811 - +0.7
120,819 - +1.1
120,841 + +1.1
120,896 - 10803 mRNA_2435 0.17 -0.3
120,918 - 10803 mRNA_2435 0.21 +0.1
120,920 + 10803 mRNA_2435 0.21 -2.0
120,921 + 10803 mRNA_2435 0.21 +0.1
120,925 - 10803 mRNA_2435 0.22 -0.2
120,929 - 10803 mRNA_2435 0.23 +1.4
120,933 + 10803 mRNA_2435 0.24 +0.4
120,980 - 10803 mRNA_2435 0.33 +1.2
120,980 + 10803 mRNA_2435 0.33 +0.3
120,981 - 10803 mRNA_2435 0.33 -1.2
120,982 + 10803 mRNA_2435 0.33 +0.8
120,983 - 10803 mRNA_2435 0.33 -0.5
120,983 + 10803 mRNA_2435 0.33 +1.5
121,183 - 10803 mRNA_2435 0.72 -1.5
121,190 + 10803 mRNA_2435 0.73 -0.6
121,228 + 10803 mRNA_2435 0.80 +0.7
121,234 + 10803 mRNA_2435 0.81 +1.4
121,242 + 10803 mRNA_2435 0.83 -0.2
121,247 - 10803 mRNA_2435 0.84 +0.3
121,256 + 10803 mRNA_2435 0.86 +0.4
121,257 + 10803 mRNA_2435 0.86 +2.1
121,261 + 10803 mRNA_2435 0.87 -1.4
121,270 - 10803 mRNA_2435 0.88 +0.8
121,276 + 10803 mRNA_2435 0.89 +0.7
121,283 - +0.8
121,287 + -0.6
121,306 + +1.2
121,308 + -0.1
121,338 + +0.1
121,340 - +0.9
121,362 - -0.2
121,401 - -0.5
121,416 + -1.7
121,416 + -0.1
121,417 - +1.2
121,461 + -0.3
121,462 + +0.7
121,462 - -0.2
121,497 + +0.8
121,516 + +0.1
121,522 - +1.3
121,538 - +0.3
121,558 - +0.1
121,560 - -0.3
121,562 + -0.5
121,605 - +0.8
121,606 + -3.1
121,608 + +0.5
121,615 - +0.3
121,620 + -0.4
121,708 - -0.1
121,725 - +0.6
121,727 + -0.3
121,739 - +1.6
121,742 + -1.0
122,306 - 10804 mRNA_2436 0.20 -0.2

Or see this region's nucleotide sequence