Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2436

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10803 and 10804 are separated by 276 nucleotides mRNA_2435: 10803 - Hypothetical Protein, at 120,809 to 121,330 10803 mRNA_2436: 10804 - KOG0254 Predicted transporter (major facilitator superfamily), at 121,607 to 125,074 10804

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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120,683 - +1.3
120,725 + -0.3
120,811 - +0.7
120,819 - +1.1
120,841 + +1.1
120,896 - 10803 mRNA_2435 0.17 -0.3
120,918 - 10803 mRNA_2435 0.21 +0.1
120,920 + 10803 mRNA_2435 0.21 -2.0
120,921 + 10803 mRNA_2435 0.21 +0.1
120,925 - 10803 mRNA_2435 0.22 -0.2
120,929 - 10803 mRNA_2435 0.23 +1.4
120,933 + 10803 mRNA_2435 0.24 +0.4
120,980 - 10803 mRNA_2435 0.33 +1.2
120,980 + 10803 mRNA_2435 0.33 +0.3
120,981 - 10803 mRNA_2435 0.33 -1.2
120,982 + 10803 mRNA_2435 0.33 +0.8
120,983 - 10803 mRNA_2435 0.33 -0.5
120,983 + 10803 mRNA_2435 0.33 +1.5
121,183 - 10803 mRNA_2435 0.72 -1.5
121,190 + 10803 mRNA_2435 0.73 -0.6
121,228 + 10803 mRNA_2435 0.80 +0.7
121,234 + 10803 mRNA_2435 0.81 +1.4
121,242 + 10803 mRNA_2435 0.83 -0.2
121,247 - 10803 mRNA_2435 0.84 +0.3
121,256 + 10803 mRNA_2435 0.86 +0.4
121,257 + 10803 mRNA_2435 0.86 +2.1
121,261 + 10803 mRNA_2435 0.87 -1.4
121,270 - 10803 mRNA_2435 0.88 +0.8
121,276 + 10803 mRNA_2435 0.89 +0.7
121,283 - +0.8
121,287 + -0.6
121,306 + +1.2
121,308 + -0.1
121,338 + +0.1
121,340 - +0.9
121,362 - -0.2
121,401 - -0.5
121,416 + -1.7
121,416 + -0.1
121,417 - +1.2
121,461 + -0.3
121,462 + +0.7
121,462 - -0.2
121,497 + +0.8
121,516 + +0.1
121,522 - +1.3
121,538 - +0.3
121,558 - +0.1
121,560 - -0.3
121,562 + -0.5
121,605 - +0.8
121,606 + -3.1
121,608 + +0.5
121,615 - +0.3
121,620 + -0.4
121,708 - -0.1
121,725 - +0.6
121,727 + -0.3
121,739 - +1.6
121,742 + -1.0
122,306 - 10804 mRNA_2436 0.20 -0.2
123,040 + 10804 mRNA_2436 0.41 +0.2
123,341 + 10804 mRNA_2436 0.50 +2.3
123,609 + 10804 mRNA_2436 0.58 -1.6
123,642 - 10804 mRNA_2436 0.59 +0.6
124,087 + 10804 mRNA_2436 0.72 -0.6
124,212 + 10804 mRNA_2436 0.75 -0.2
124,513 - 10804 mRNA_2436 0.84 +0.1
124,866 + -0.7
124,918 + +2.9
125,238 + +0.2
125,398 - +0.5
125,672 - +1.2

Or see this region's nucleotide sequence