Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2445

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10813 and 10814 are separated by 367 nucleotides mRNA_2445: 10813 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 151,366 to 153,133 10813 mRNA_2446: 10814 - K11396 YNG2, EAF4 chromatin modification-related protein YNG2, at 153,501 to 155,365 10814

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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150,369 + +1.1
150,404 - -1.9
150,411 + -0.1
150,419 + -1.8
150,421 + -0.8
150,432 + -0.1
150,546 - +4.1
150,574 + +0.8
150,574 + +0.4
150,581 - +1.0
150,608 + +0.7
150,742 + -0.3
150,885 + +2.6
151,364 - +1.9
151,407 - -1.2
151,722 - 10813 mRNA_2445 0.20 +0.9
152,028 + 10813 mRNA_2445 0.37 +1.5
152,903 + 10813 mRNA_2445 0.87 -0.3
153,036 - -0.1
153,188 - +0.2
153,355 + +1.6
153,357 + +0.7
153,371 - +0.7
153,377 - +0.8

Or see this region's nucleotide sequence