Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2453

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10820 and 10821 are separated by 468 nucleotides10821 and 10822 are separated by 985 nucleotides mRNA_2452: 10820 - HMMPfam-Ribonuclease H2 non-catalytic subunit (Ylr154p-like)-PF08615, at 165,209 to 166,286 10820 mRNA_2453: 10821 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 166,755 to 168,701 10821 mRNA_2454: 10822 - K12823 DDX5, DBP2 ATP-dependent RNA helicase DDX5/DBP2, at 169,687 to 172,594 10822

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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165,847 - 10820 mRNA_2452 0.59 +0.8
165,917 - 10820 mRNA_2452 0.66 -0.1
166,296 - +0.8
166,605 - +1.6
167,048 + 10821 mRNA_2453 0.15 +1.2
167,311 - 10821 mRNA_2453 0.29 +2.4
167,484 + 10821 mRNA_2453 0.37 -0.4
167,635 + 10821 mRNA_2453 0.45 +2.4
167,744 + 10821 mRNA_2453 0.51 +1.0
167,785 + 10821 mRNA_2453 0.53 -0.2
167,899 - 10821 mRNA_2453 0.59 +0.7
168,065 - 10821 mRNA_2453 0.67 +1.4
168,367 - 10821 mRNA_2453 0.83 +0.4
168,389 + 10821 mRNA_2453 0.84 -0.1
168,524 + +0.6
168,613 - +1.0
168,634 - +0.5
168,649 - +0.0
168,659 - +1.8
168,737 + +0.3
168,756 - -1.3
168,778 - +1.3
168,790 + +0.5
168,792 + +1.0
168,794 + +0.5
168,797 + +0.2
168,797 + +0.1
168,802 - +0.4
168,804 + -1.9
168,808 - -0.0
168,818 + +0.8
168,819 - -2.8
168,821 - +2.7
168,822 + -1.1
168,824 + +1.2
168,824 + +0.0
168,840 + +0.1
168,846 + -0.0
168,861 - +0.6
168,883 - +2.2
168,912 - +0.1
168,921 + -0.3
168,925 - -0.0
168,944 + +1.9
168,949 + +1.9
168,953 + +0.1
168,953 - +1.4
168,965 - -0.5
168,965 + -0.1
168,967 + +0.1
168,973 - -1.2
169,002 - -0.0
169,006 - -0.8
169,009 - +0.1
169,010 - +0.2
169,012 + +0.4
169,013 - -0.3
169,019 + +0.2
169,023 - -0.4
169,025 - -1.0
169,025 - -1.8
169,026 + +1.9
169,027 - -0.1
169,034 + +1.4
169,036 - -0.8
169,041 - -1.3
169,041 - +0.1
169,046 + +0.7
169,048 - +0.0
169,048 - -0.3
169,050 - +0.0
169,053 + -2.6
169,053 + +0.7
169,057 - +1.6
169,059 + +0.4
169,089 - +0.2
169,090 - -0.6
169,097 - +0.2
169,101 + +0.4
169,101 + +0.6
169,102 + -2.1
169,103 + +0.1
169,105 + +0.4
169,106 + +0.8
169,107 + -1.8
169,107 - +0.4
169,108 + -1.3
169,110 - +0.3
169,119 - -0.5
169,124 + -0.5
169,138 + +1.8
169,155 - -2.4
169,172 - -0.4
169,178 + +0.3
169,179 - -0.1
169,184 - -1.8
169,185 + +1.1
169,198 + -0.9
169,211 - +0.6
169,291 - +0.9
169,300 + +0.0
169,450 + +0.1
169,683 + -0.0

Or see this region's nucleotide sequence