Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2459

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10826 and 10827 are separated by 370 nucleotides10827 and 10828 are separated by 377 nucleotides mRNA_2458: 10826 - K04799 FEN1, RAD2 flap endonuclease-1, at 183,785 to 185,672 10826 mRNA_2459: 10827 - KOG2747 Histone acetyltransferase (MYST family), at 186,043 to 188,568 10827 mRNA_2460: 10828 - SUPERFAMILY--SSF57997, at 188,946 to 195,534 10828

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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185,978 - -0.6
186,290 + +0.5
186,579 - 10827 mRNA_2459 0.21 -0.3
188,411 - +0.2
188,726 + +2.1
188,739 - +1.6
188,751 + +2.6
188,779 + -0.3
188,926 + +1.1
189,378 + +0.9
189,540 + +0.2
189,543 - -1.2

Or see this region's nucleotide sequence