Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2476

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10844 and 10845 are separated by 417 nucleotides mRNA_2476: 10844 - KOG0673 Thymidylate synthase, at 240,298 to 241,620 10844 mRNA_2477: 10845 - K00560 thyA, TYMS thymidylate synthase, at 242,038 to 243,139 10845

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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239,300 + -0.6
239,799 - +0.6
240,017 + -0.0
240,331 - -1.5
240,485 + 10844 mRNA_2476 0.14 +1.0
240,512 - 10844 mRNA_2476 0.16 +0.1
240,518 + 10844 mRNA_2476 0.17 +1.1
240,790 - 10844 mRNA_2476 0.37 +0.1
240,911 + 10844 mRNA_2476 0.46 -1.8
241,256 - 10844 mRNA_2476 0.72 +0.4
241,368 + 10844 mRNA_2476 0.81 +2.8
241,518 + +0.6
241,540 - -1.7
241,584 - -1.9
241,659 - +0.9

Or see this region's nucleotide sequence