Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2487

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10854 and 10855 are separated by 525 nucleotides mRNA_2486: 10854 - KOG3134 Predicted membrane protein, at 262,874 to 263,661 10854 mRNA_2487: 10855 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 264,187 to 266,262 10855

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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263,407 - 10854 mRNA_2486 0.68 +0.7
263,438 - 10854 mRNA_2486 0.72 +1.0
263,596 - +0.1
263,706 + -2.2
263,992 - +2.5
264,506 + 10855 mRNA_2487 0.15 +0.6
264,561 - 10855 mRNA_2487 0.18 +1.1
264,651 - 10855 mRNA_2487 0.22 -1.0
265,086 + 10855 mRNA_2487 0.43 -0.1
265,713 - 10855 mRNA_2487 0.74 +1.8
266,215 - +0.1
266,341 + +0.2
266,850 - +0.2
267,068 - +1.4

Or see this region's nucleotide sequence