Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2503

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10870 and 10871 are separated by 527 nucleotides mRNA_2502: 10870 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 303,475 to 306,650 10870 mRNA_2503: 10871 - SUPERFAMILY--SSF63829, at 307,178 to 308,891 10871

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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306,308 - 10870 mRNA_2502 0.89 -1.1
306,310 + 10870 mRNA_2502 0.89 +1.8
306,316 - 10870 mRNA_2502 0.89 +0.8
306,318 - 10870 mRNA_2502 0.90 +1.0
306,511 + +0.9
306,570 - -0.7
306,591 - +4.1
306,593 - -1.9
306,594 - -1.2
306,595 + +0.3
306,609 - +0.0
306,611 + -0.7
306,717 - +2.2
306,728 - -0.7
306,734 - -1.8
306,750 + +1.3
306,801 - -2.3
306,818 - +1.4
306,824 + -0.5
306,841 + +1.0
306,847 - +0.2
306,851 - +2.0
306,852 - +0.9
306,856 - -1.8
306,884 - +0.3
306,887 - +0.2
306,887 - +1.3
306,895 + -0.6
306,904 - -0.5
306,982 + +0.5
306,987 - -0.5
306,996 + +1.3
306,998 - -0.8
306,999 + -0.2
307,008 + +0.8
307,021 + +1.8
307,046 - -0.6
307,058 - +1.8
307,063 - +0.1
307,073 - +2.2
307,077 - +0.4
307,081 + +0.5
307,125 - +3.3
307,143 - +0.1
307,149 + +2.8
307,196 + +0.5
307,197 + +0.2
307,199 + +0.6
307,206 - +0.5
307,208 + +0.1
307,208 + +0.4
307,211 + +2.8
307,212 - -1.0
307,222 - -0.8
307,233 + +1.4
307,235 - -0.1
307,238 + +3.1
307,247 + -0.6
307,252 + -0.3
307,253 - +3.0
307,255 - -0.1
307,328 - -0.8
307,710 - 10871 mRNA_2503 0.31 -1.3
307,807 - 10871 mRNA_2503 0.37 +0.1
307,830 + 10871 mRNA_2503 0.38 -1.0
308,270 - 10871 mRNA_2503 0.64 +0.2
308,391 + 10871 mRNA_2503 0.71 +0.3
308,519 - 10871 mRNA_2503 0.78 +2.5
308,794 - +0.9
308,971 + +1.5
308,971 - +2.3
308,993 - +0.6
308,999 + +2.6
309,104 - -0.4
309,134 + +0.3
309,184 + +0.5
309,281 + -0.2
309,441 + +0.3
309,560 + -0.1
309,839 - -0.7

Or see this region's nucleotide sequence