Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2504

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10872 and 10873 are separated by 49 nucleotides mRNA_2504: 10872 - BLAST Immunoglobulin-like domain contaning protein [Rho..., at 309,895 to 311,581 10872 mRNA_2505: 10873 - KOG3299 Uncharacterized conserved protein, at 311,631 to 312,608 10873

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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308,971 + +1.5
308,971 - +2.3
308,993 - +0.6
308,999 + +2.6
309,104 - -0.4
309,134 + +0.3
309,184 + +0.5
309,281 + -0.2
309,441 + +0.3
309,560 + -0.1
309,839 - -0.7
310,443 + 10872 mRNA_2504 0.32 -0.3
310,631 + 10872 mRNA_2504 0.44 +0.8
310,754 - 10872 mRNA_2504 0.51 -0.7
310,872 - 10872 mRNA_2504 0.58 -0.2
310,919 - 10872 mRNA_2504 0.61 -2.2
311,187 + 10872 mRNA_2504 0.77 +0.6
311,188 + 10872 mRNA_2504 0.77 -0.0
311,529 + -0.6
311,620 - +0.1
311,769 + 10873 mRNA_2505 0.14 +3.4
312,350 - 10873 mRNA_2505 0.74 +0.4
312,469 + 10873 mRNA_2505 0.86 -0.8

Or see this region's nucleotide sequence