Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2517

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10885 and 10886 are separated by 144 nucleotides mRNA_2517: 10885 - K01078 E3.1.3.2 acid phosphatase, at 337,169 to 339,877 10885 mRNA_2518: 10886 - K03189 ureG urease accessory protein, at 340,022 to 341,494 10886

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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336,208 + +1.9
336,226 - +0.2
336,233 - +0.2
336,236 + +0.4
336,239 - +0.7
336,240 - +1.7
336,243 + -0.0
336,337 + -0.4
336,338 - +2.0
336,339 - +1.8
336,340 + +0.3
336,341 - +0.1
336,349 + +0.7
336,375 + +0.4
336,376 + +2.8
336,379 + -0.8
336,382 + +0.2
336,405 + -1.1
336,410 + +0.1
336,414 + +0.5
336,414 + -0.7
336,429 + +2.0
336,432 - +0.1
336,445 - +1.0
336,453 + +0.9
336,456 + +2.0
336,480 + -0.1
336,482 + -0.3
336,519 + +1.2
336,533 - +1.1
336,541 + +0.5
336,544 - -0.0
336,559 + -0.8
336,564 - +0.7
336,564 - -0.0
336,575 + -0.7
336,587 + -0.5
336,593 - +0.7
336,597 + -0.4
336,604 + +0.2
336,614 + -1.6
336,616 + -0.2
336,621 - -0.2
336,644 - +0.6
336,651 + -0.2
336,657 - +1.6
336,693 + +2.0
336,724 - +1.5
336,728 - -0.6
336,732 - +0.0
336,747 + +1.2
336,849 - -1.4
336,852 + +0.6
336,874 - +0.2
336,885 + -0.4
336,951 - +0.2
337,005 + +0.1
337,109 + -2.0
337,132 - -0.4
337,249 - -0.7
337,297 - -0.2
337,310 + -2.2
337,406 + +1.0
338,594 - 10885 mRNA_2517 0.53 +0.5
338,610 - 10885 mRNA_2517 0.53 +0.7
338,725 - 10885 mRNA_2517 0.57 +0.3
338,745 + 10885 mRNA_2517 0.58 +0.7
338,870 + 10885 mRNA_2517 0.63 +1.4
339,151 - 10885 mRNA_2517 0.73 +2.3
339,157 - 10885 mRNA_2517 0.73 -0.2
339,170 - 10885 mRNA_2517 0.74 +1.0
339,177 + 10885 mRNA_2517 0.74 -1.3
339,185 + 10885 mRNA_2517 0.74 -0.9
339,218 - 10885 mRNA_2517 0.76 +1.1
339,222 + 10885 mRNA_2517 0.76 +0.2
339,224 - 10885 mRNA_2517 0.76 +0.1
339,230 + 10885 mRNA_2517 0.76 -0.1
339,230 - 10885 mRNA_2517 0.76 +1.5
339,234 + 10885 mRNA_2517 0.76 +1.7
339,239 - 10885 mRNA_2517 0.76 -0.8
339,242 - 10885 mRNA_2517 0.77 +0.8
339,243 + 10885 mRNA_2517 0.77 -0.3
339,252 - 10885 mRNA_2517 0.77 +1.3
339,279 + 10885 mRNA_2517 0.78 -0.3
339,367 - 10885 mRNA_2517 0.81 +0.6
339,368 - 10885 mRNA_2517 0.81 -0.6
339,381 - 10885 mRNA_2517 0.82 +0.8
339,491 + 10885 mRNA_2517 0.86 +0.6
339,798 - +0.5
339,909 - +1.9
339,938 + +0.8
339,939 + -0.4
339,942 - +2.3
339,946 - +1.3
339,947 + -0.2
339,951 + +1.0
339,951 - -0.2
339,953 + +1.6
339,959 + -1.1
339,963 + -0.4
340,104 - +1.8
340,112 + +0.5
340,147 + +0.5
340,244 + 10886 mRNA_2518 0.15 +0.2
340,259 + 10886 mRNA_2518 0.16 +2.0
340,408 + 10886 mRNA_2518 0.26 -1.6
340,537 + 10886 mRNA_2518 0.35 +0.2
340,822 - 10886 mRNA_2518 0.54 +2.7

Or see this region's nucleotide sequence