Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2554

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10921 and 10922 are separated by 603 nucleotides10922 and 10923 are separated by 102 nucleotides mRNA_2553: 10921 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 428,822 to 431,100 10921 mRNA_2554: 10922 - BLAST Amino acid/polyamine transporter I [Sporothrix insect..., at 431,704 to 432,671 10922 mRNA_2555: 10923 - K12736 PPWD1 peptidylprolyl isomerase domain and WD repeat-containing protein 1, at 432,774 to 435,316 10923

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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430,765 - 10921 mRNA_2553 0.85 +0.7
430,814 - 10921 mRNA_2553 0.87 -0.0
430,833 + 10921 mRNA_2553 0.88 +1.4
430,918 - +0.6
431,305 - +0.3
431,314 + -0.2
431,333 + -0.1
431,338 - -1.0
431,613 - -1.2
431,777 - +1.4
432,238 + 10922 mRNA_2554 0.55 +0.1
432,322 + 10922 mRNA_2554 0.64 +3.0
432,342 + 10922 mRNA_2554 0.66 +4.2
432,351 - 10922 mRNA_2554 0.67 +1.3
432,357 + 10922 mRNA_2554 0.67 +1.7
432,403 - 10922 mRNA_2554 0.72 -0.0
432,588 - -1.4

Or see this region's nucleotide sequence