Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2561

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10929 and 10930 are separated by 250 nucleotides mRNA_2561: 10929 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 446,568 to 451,968 10929 mRNA_2562: 10930 - Hypothetical Protein, at 452,219 to 453,821 10930

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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445,648 - +0.4
445,703 - -0.2
445,712 - +0.7
445,724 + -1.5
445,734 + +1.0
445,778 + +0.1
445,780 + +1.0
445,786 + +1.9
445,792 + +1.1
445,806 - +1.1
445,813 - +0.3
445,861 - +0.7
445,863 + +0.3
445,867 + +0.2
445,875 + -0.6
445,875 + -0.2
445,876 + +1.1
445,876 + +0.3
445,877 - -0.1
445,899 - +2.5
445,903 + -0.9
445,921 - +1.8
445,940 - +0.2
445,943 - +0.8
446,025 - -0.2
446,075 - +0.5
446,075 - +2.6
446,079 + +2.2
446,080 + +0.4
446,089 - -1.5
446,142 + -1.0
446,158 + -0.3
446,158 - -0.7
446,163 - -1.8
446,163 - +0.2
446,164 + -0.3
446,164 - -0.1
446,164 + -0.9
446,165 - -0.7
446,165 + +1.6
446,167 - +1.5
446,176 + +0.1
446,180 - +1.3
446,223 + +0.2
446,312 - -1.6
446,334 - +1.6
446,346 - -1.6
446,463 - -0.0
446,465 - +0.3
446,473 + +0.2
446,478 - +0.7
446,491 + -0.5
446,614 + -0.6
446,646 - +0.1
446,793 + +0.4
446,793 - +1.5
446,796 - +0.0
446,804 + +2.0
447,080 - +0.5
447,253 - 10929 mRNA_2561 0.13 -0.1
447,695 - 10929 mRNA_2561 0.21 +1.5
447,859 - 10929 mRNA_2561 0.24 -0.6
448,233 - 10929 mRNA_2561 0.31 +0.6
448,747 + 10929 mRNA_2561 0.40 +0.7
448,849 - 10929 mRNA_2561 0.42 -2.4
449,014 - 10929 mRNA_2561 0.45 +0.1
449,163 + 10929 mRNA_2561 0.48 -0.4
449,298 + 10929 mRNA_2561 0.51 +0.7
449,303 - 10929 mRNA_2561 0.51 +0.3
449,872 + 10929 mRNA_2561 0.61 +2.1
449,892 + 10929 mRNA_2561 0.62 -1.1
449,912 - 10929 mRNA_2561 0.62 +0.1
450,033 + 10929 mRNA_2561 0.64 -0.1
450,297 + 10929 mRNA_2561 0.69 -2.0
450,310 + 10929 mRNA_2561 0.69 +1.1
450,388 + 10929 mRNA_2561 0.71 +1.9
450,656 + 10929 mRNA_2561 0.76 +1.7
450,893 + 10929 mRNA_2561 0.80 +0.1
451,082 + 10929 mRNA_2561 0.84 -0.2
451,093 + 10929 mRNA_2561 0.84 -1.1
451,097 - 10929 mRNA_2561 0.84 +1.0
452,291 - +3.5
452,449 + 10930 mRNA_2562 0.14 -0.9
452,453 - 10930 mRNA_2562 0.15 -0.3
452,543 + 10930 mRNA_2562 0.20 +0.0
452,606 + 10930 mRNA_2562 0.24 +0.9
452,704 - 10930 mRNA_2562 0.30 -1.0
452,798 - 10930 mRNA_2562 0.36 -2.1

Or see this region's nucleotide sequence