Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2574

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10941 and 10942 are separated by 130 nucleotides10942 and 10943 are separated by 131 nucleotides mRNA_2573: 10941 - K03848 ALG6 alpha-1,3-glucosyltransferase, at 474,232 to 477,732 10941 mRNA_2574: 10942 - K10158 B3GAT3 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3, at 477,863 to 478,879 10942 mRNA_2575: 10943 - KOG1022 Acetylglucosaminyltransferase EXT2/exostosin 2, at 479,011 to 480,812 10943

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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476,925 + 10941 mRNA_2573 0.77 +0.2
477,467 - +1.9
477,479 + +2.4
477,770 - +0.8
477,793 + +2.1
477,795 + -0.4
477,795 + +2.3
477,810 - +0.5
477,881 - -0.9
477,939 + +0.7
477,966 - 10942 mRNA_2574 0.10 -2.0
478,008 + 10942 mRNA_2574 0.14 +0.2
478,075 - 10942 mRNA_2574 0.21 -1.2
478,231 + 10942 mRNA_2574 0.36 +0.5
478,239 - 10942 mRNA_2574 0.37 -0.5
478,243 + 10942 mRNA_2574 0.37 -1.4
478,243 - 10942 mRNA_2574 0.37 +0.3
478,360 + 10942 mRNA_2574 0.49 +0.1
478,396 + 10942 mRNA_2574 0.52 -0.5
478,809 - -0.9
478,826 - +1.0
478,828 + -0.1
479,074 - +0.4
479,107 + -1.3
479,116 - +1.9
479,120 - -2.8
479,121 - +0.1
479,238 + 10943 mRNA_2575 0.13 -1.0
479,254 - 10943 mRNA_2575 0.13 -1.3
479,367 - 10943 mRNA_2575 0.20 +1.0
479,544 + 10943 mRNA_2575 0.30 +0.3
479,618 - 10943 mRNA_2575 0.34 +0.4

Or see this region's nucleotide sequence