Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2602

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10969 and 10970 are separated by 159 nucleotides10970 and 10971 are separated by 469 nucleotides mRNA_2601: 10969 - Hypothetical Protein, at 570,670 to 572,190 10969 mRNA_2602: 10970 - HMMPfam-Glycosyltransferase family 10 (fucosyltransferase)-PF00852,SUPERFAMILY--SSF53756, at 572,350 to 572,862 10970 mRNA_2603: 10971 - Hypothetical Protein, at 573,332 to 575,202 10971

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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571,477 - 10969 mRNA_2601 0.53 +1.0
571,493 - 10969 mRNA_2601 0.54 +0.2
571,504 + 10969 mRNA_2601 0.55 +0.1
571,545 + 10969 mRNA_2601 0.58 +0.3
571,752 + 10969 mRNA_2601 0.71 -0.0
571,938 + 10969 mRNA_2601 0.83 -0.8
571,946 + 10969 mRNA_2601 0.84 -0.5
572,063 - +0.1
572,078 + +0.6
572,503 + 10970 mRNA_2602 0.30 -0.0
572,505 + 10970 mRNA_2602 0.30 +0.3
572,552 + 10970 mRNA_2602 0.39 +0.6
572,573 + 10970 mRNA_2602 0.43 -0.2
572,746 - 10970 mRNA_2602 0.77 -0.3
572,759 + 10970 mRNA_2602 0.80 +0.4
572,841 - +1.0
573,081 - +1.9
573,107 + -0.3
573,236 + -0.7
573,249 - -0.9
573,264 - -0.8
573,265 + -0.9
573,285 - +0.3
573,447 - +3.6
573,539 - 10971 mRNA_2603 0.11 +0.7
573,717 + 10971 mRNA_2603 0.21 +0.2
573,724 - 10971 mRNA_2603 0.21 +0.7
573,739 + 10971 mRNA_2603 0.22 +2.8
573,740 - 10971 mRNA_2603 0.22 +1.7

Or see this region's nucleotide sequence