Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2611

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10978 and 10979 are separated by 494 nucleotides10979 and 10980 are separated by 127 nucleotides mRNA_2610: 10978 - HMMPfam-OsmC-like protein-PF02566,SUPERFAMILY--SSF82784,TIGRFAM-organ_hyd_perox peroxiredoxin, Ohr subfamily-TIGR03561, at 590,070 to 590,802 10978 mRNA_2611: 10979 - BLAST phosphatase iiic [Colletotrichum gloeosporioides ..., at 591,297 to 591,714 10979 mRNA_2612: 10980 - HMMPfam-Protein kinase C terminal domain-PF00433, at 591,842 to 594,740 10980

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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590,403 - 10978 mRNA_2610 0.45 +0.7
590,557 + 10978 mRNA_2610 0.66 +0.8
590,692 - 10978 mRNA_2610 0.85 +0.6
590,845 - -0.0
590,848 + +0.5
590,861 + +0.1
590,869 + +0.7
590,888 - +2.4
591,000 + +0.2
591,002 + +3.7
591,134 + -0.0
591,150 - +0.4
591,345 - 10979 mRNA_2611 0.11 +0.3
591,453 + 10979 mRNA_2611 0.37 +0.3
592,171 + 10980 mRNA_2612 0.11 +0.5
592,304 - 10980 mRNA_2612 0.16 -0.0
592,306 + 10980 mRNA_2612 0.16 +0.7
592,327 - 10980 mRNA_2612 0.17 +1.0
592,328 + 10980 mRNA_2612 0.17 +1.1

Or see this region's nucleotide sequence