Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2685

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11052 and 11053 are separated by 762 nucleotides mRNA_2684: 11052 - K02144 ATPeV1H V-type H+-transporting ATPase subunit H, at 775,644 to 777,796 11052 mRNA_2685: 11053 - Hypothetical Protein, at 778,559 to 779,074 11053

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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777,797 + -1.1
777,799 - +0.4
777,812 - +0.3
777,843 + +1.5
777,919 - +2.0
777,954 - +1.0
777,954 - +0.9
777,993 + -0.1
778,011 - -0.8
778,082 - -1.0
778,089 - +1.5
778,126 + +0.9
778,203 + -1.9
778,222 - +1.3
778,233 - +0.4
778,253 - +2.6
778,282 - -0.3
778,306 + +1.2
778,352 - -0.4
778,367 - +0.5
778,426 - +2.3
778,433 - +2.6
778,453 + +0.3
778,487 - +0.3
778,495 - +0.3
778,520 + +3.6
778,538 - +2.1
778,549 - +2.2
778,550 - -0.4
778,590 - +3.1
778,596 + -0.0
778,638 - 11053 mRNA_2685 0.15 +1.0
778,697 + 11053 mRNA_2685 0.27 -1.3
778,714 + 11053 mRNA_2685 0.30 +2.9
778,719 + 11053 mRNA_2685 0.31 +0.3
778,744 - 11053 mRNA_2685 0.36 -0.3
778,761 - 11053 mRNA_2685 0.39 -0.3
778,762 + 11053 mRNA_2685 0.39 +1.4
778,763 + 11053 mRNA_2685 0.40 +1.2
778,786 + 11053 mRNA_2685 0.44 +1.0
778,826 - 11053 mRNA_2685 0.52 +0.6
778,834 - 11053 mRNA_2685 0.53 -0.2
778,838 - 11053 mRNA_2685 0.54 -1.4
778,838 - 11053 mRNA_2685 0.54 +2.1
778,842 - 11053 mRNA_2685 0.55 -0.8
778,847 + 11053 mRNA_2685 0.56 -0.8
778,848 + 11053 mRNA_2685 0.56 +0.1
778,852 - 11053 mRNA_2685 0.57 -0.2
778,853 + 11053 mRNA_2685 0.57 +0.1
778,857 - 11053 mRNA_2685 0.58 +0.5
778,866 - 11053 mRNA_2685 0.59 -0.2
778,869 - 11053 mRNA_2685 0.60 +1.3
778,870 - 11053 mRNA_2685 0.60 +0.6
778,908 + 11053 mRNA_2685 0.68 -0.2
778,913 - 11053 mRNA_2685 0.69 +0.7
778,913 + 11053 mRNA_2685 0.69 +1.0
778,914 + 11053 mRNA_2685 0.69 +1.7
778,935 - 11053 mRNA_2685 0.73 -1.5
778,976 - 11053 mRNA_2685 0.81 -0.1
778,981 + 11053 mRNA_2685 0.82 +1.8
779,004 - 11053 mRNA_2685 0.86 -0.4
779,024 - +2.7
779,027 - -0.1
779,032 - +0.7
779,067 - +0.2
779,094 - +0.1
779,106 + +0.7
779,111 - -0.6
779,116 - +0.6
779,118 - +1.6
779,121 - -0.4
779,122 - +1.0
779,122 + +0.7
779,130 - +1.0
779,135 - -0.6
779,143 - -0.3
779,157 + +0.2
779,159 + -1.1
779,159 + -0.2
779,161 + +1.0
779,161 - +0.7
779,162 + -2.0
779,162 + -2.7
779,163 + -0.5
779,171 - -0.9
779,176 - +0.2
779,179 - +0.1
779,181 - +0.4
779,182 - +1.7
779,183 - +0.2
779,184 - +0.5
779,186 - +0.7

Or see this region's nucleotide sequence