Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2686

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11054 and 11055 are separated by 595 nucleotides mRNA_2686: 11054 - Interpro Fungal potassium channel 0, at 510 to 3,087 11054 mRNA_2687: 11055 - K16542 CDK5RAP2 CDK5 regulatory subunit-associated protein 2, at 3,683 to 8,144 11055

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1 + +0.0
28 + +1.2
28 + +3.3
37 + +0.4
37 + -0.5
38 + +0.5
44 + +0.0
48 - +0.9
49 + +0.9
49 + -1.2
49 + +0.1
49 + -0.1
49 + +0.9
49 + +1.4
49 - +0.5
52 + +0.5
54 - +0.6
54 - +1.0
58 + +0.1
62 + +0.8
70 - +0.6
73 + +0.0
74 - +1.9
74 + +0.2
112 - -0.8
120 - -0.1
138 + -0.9
142 + -1.9
142 + +0.2
142 + +0.8
144 + -0.8
145 - +0.8
147 + +1.0
152 + +4.2
159 + +1.5
159 - +1.6
163 + +0.2
169 - +1.9
170 + +1.0
171 - -0.7
173 + +0.1
175 - +0.6
176 + +2.4
177 + -1.3
183 + -0.9
193 + -0.9
205 + +0.7
231 + +2.7
232 + +1.6
235 - -1.9
252 - +2.8
259 + -0.1
259 + +1.9
259 + +0.3
262 - -0.1
269 + +0.5
273 + -0.7
275 - +0.9
289 + +3.1
299 + +1.3
312 - -0.3
339 + -1.1
352 + +0.4
357 + -0.2
358 + -0.1
368 - +1.4
417 - -0.7
429 + -0.3
434 + +1.0
445 + +3.0
462 + +0.7
462 + +0.8
502 + -0.3
529 - +1.7
540 - +0.1
561 + -1.3
584 + -0.5
584 - +2.8
584 + -1.0
633 + -0.3
636 + +1.1
646 + +0.2
703 - +0.8
736 - -0.9
772 - 11054 mRNA_2686 0.10 +1.2
845 - 11054 mRNA_2686 0.13 -0.6
871 + 11054 mRNA_2686 0.14 +2.8
911 + 11054 mRNA_2686 0.16 -0.3
919 - 11054 mRNA_2686 0.16 -1.1
922 + 11054 mRNA_2686 0.16 +0.3
937 - 11054 mRNA_2686 0.17 +3.1
946 - 11054 mRNA_2686 0.17 +0.5
1,039 + 11054 mRNA_2686 0.21 +2.1
1,042 - 11054 mRNA_2686 0.21 +0.2
1,056 + 11054 mRNA_2686 0.21 +2.1
1,056 + 11054 mRNA_2686 0.21 -0.7
1,059 - 11054 mRNA_2686 0.21 +0.5
1,059 - 11054 mRNA_2686 0.21 +0.7
1,079 + 11054 mRNA_2686 0.22 +1.5
1,089 + 11054 mRNA_2686 0.22 +0.0
1,090 - 11054 mRNA_2686 0.22 +0.9
1,099 - 11054 mRNA_2686 0.23 +1.3
1,116 - 11054 mRNA_2686 0.24 +0.1
1,219 - 11054 mRNA_2686 0.28 +1.0
1,230 + 11054 mRNA_2686 0.28 +1.8
1,258 - 11054 mRNA_2686 0.29 -0.4
1,270 - 11054 mRNA_2686 0.29 -0.9
1,272 + 11054 mRNA_2686 0.30 +1.6
1,324 + 11054 mRNA_2686 0.32 -0.2
1,351 + 11054 mRNA_2686 0.33 -1.5
1,464 + 11054 mRNA_2686 0.37 +0.7
1,508 + 11054 mRNA_2686 0.39 -0.2
1,514 - 11054 mRNA_2686 0.39 +3.0
1,611 + 11054 mRNA_2686 0.43 -0.2
1,642 + 11054 mRNA_2686 0.44 +0.5
1,671 + 11054 mRNA_2686 0.45 +4.0
1,680 + 11054 mRNA_2686 0.45 +1.0
1,683 - 11054 mRNA_2686 0.46 +1.5
1,684 + 11054 mRNA_2686 0.46 +0.2
1,699 + 11054 mRNA_2686 0.46 -0.6
1,836 + 11054 mRNA_2686 0.51 +1.1
1,912 + 11054 mRNA_2686 0.54 +1.0
1,961 - 11054 mRNA_2686 0.56 +1.0
2,068 - 11054 mRNA_2686 0.60 +0.8
2,071 - 11054 mRNA_2686 0.61 +0.9
2,079 + 11054 mRNA_2686 0.61 +1.3
2,096 - 11054 mRNA_2686 0.62 -1.1
2,112 + 11054 mRNA_2686 0.62 +0.4
2,128 + 11054 mRNA_2686 0.63 +2.4
2,140 + 11054 mRNA_2686 0.63 -2.2
2,141 - 11054 mRNA_2686 0.63 +0.1
2,158 + 11054 mRNA_2686 0.64 -0.2
2,196 + 11054 mRNA_2686 0.65 +0.8
2,238 + 11054 mRNA_2686 0.67 +0.3
2,250 - 11054 mRNA_2686 0.67 +0.2
2,271 + 11054 mRNA_2686 0.68 +1.5
2,404 - 11054 mRNA_2686 0.73 +0.5
2,419 + 11054 mRNA_2686 0.74 +0.2
2,442 - 11054 mRNA_2686 0.75 -1.1
2,444 - 11054 mRNA_2686 0.75 +2.5
2,534 - 11054 mRNA_2686 0.79 -0.8
2,547 - 11054 mRNA_2686 0.79 -1.4
2,564 + 11054 mRNA_2686 0.80 -0.2
2,685 - 11054 mRNA_2686 0.84 -1.6
2,806 + 11054 mRNA_2686 0.89 -0.3
2,806 - 11054 mRNA_2686 0.89 +0.2
2,814 - 11054 mRNA_2686 0.89 +0.8
2,938 + +2.4
2,971 + +1.2
2,984 - +0.9
3,056 - -0.7
3,090 + +1.8
3,127 + -0.9
3,135 - -1.9
3,141 + -0.5
3,282 + -0.2
3,380 + -0.3
3,409 - +1.0

Or see this region's nucleotide sequence