Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2734

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11101 and 11102 are separated by 292 nucleotides11102 and 11103 are separated by 133 nucleotides mRNA_2733: 11101 - KOG0254 Predicted transporter (major facilitator superfamily), at 95,902 to 98,475 11101 mRNA_2734: 11102 - K14779 DDX52, ROK1 ATP-dependent RNA helicase DDX52/ROK1, at 98,768 to 101,128 11102 mRNA_2735: 11103 - K02257 COX10 protoheme IX farnesyltransferase, at 101,262 to 102,881 11103

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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97,830 - 11101 mRNA_2733 0.75 +0.1
97,920 - 11101 mRNA_2733 0.78 +1.6
97,925 + 11101 mRNA_2733 0.79 +0.6
97,928 - 11101 mRNA_2733 0.79 -0.3
97,958 - 11101 mRNA_2733 0.80 +0.0
97,965 + 11101 mRNA_2733 0.80 -0.2
97,972 + 11101 mRNA_2733 0.80 -0.4
97,979 + 11101 mRNA_2733 0.81 +0.2
97,986 + 11101 mRNA_2733 0.81 +2.3
98,034 + 11101 mRNA_2733 0.83 +1.2
98,248 - +0.6
98,251 + +1.0
98,450 + +0.4
98,582 + +0.6
98,709 + -0.3
98,839 + -0.5
101,203 + +0.4
101,221 + -2.0
101,952 + 11103 mRNA_2735 0.43 -0.8

Or see this region's nucleotide sequence