Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2766

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11133 and 11134 are separated by 250 nucleotides11134 and 11135 are separated by 130 nucleotides mRNA_2765: 11133 - Hypothetical Protein, at 164,527 to 165,110 11133 mRNA_2766: 11134 - KOG2827 Uncharacterized conserved protein, at 165,361 to 166,420 11134 mRNA_2767: 11135 - K10084 EDEM1 ER degradation enhancer, mannosidase alpha-like 1, at 166,551 to 170,333 11135

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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164,470 - +0.1
164,745 - 11133 mRNA_2765 0.37 -0.6
165,456 + -0.7
166,437 + -0.5
166,477 - +0.9
166,490 + +0.3
166,614 - +0.7
166,647 + -1.5
166,655 - -0.5
166,781 - -0.6
166,976 - 11135 mRNA_2767 0.11 -1.0
167,056 - 11135 mRNA_2767 0.13 +1.6
167,208 - 11135 mRNA_2767 0.17 +1.8

Or see this region's nucleotide sequence