Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2775

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11142 and 11143 are separated by 369 nucleotides11143 and 11144 are separated by 58 nucleotides mRNA_2774: 11142 - K02991 RP-S6e, RPS6 small subunit ribosomal protein S6e, at 180,675 to 181,907 11142 mRNA_2775: 11143 - KOG1646 40S ribosomal protein S6, at 182,277 to 183,930 11143 mRNA_2776: 11144 - K14292 TGS1 trimethylguanosine synthase, at 183,989 to 185,404 11144

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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182,070 - -1.5
182,071 + -0.0
182,079 - -0.2
182,080 - +0.7
182,083 + -0.4
182,087 + +1.5
182,110 + -2.0
182,153 - +0.7
182,257 + +0.7
182,261 - +1.0
182,593 - 11143 mRNA_2775 0.19 +3.7
182,597 + 11143 mRNA_2775 0.19 +1.1
182,713 - 11143 mRNA_2775 0.26 -0.6
183,056 + 11143 mRNA_2775 0.47 +0.7
183,169 - 11143 mRNA_2775 0.54 +1.7
183,291 - 11143 mRNA_2775 0.61 +1.5
183,360 + 11143 mRNA_2775 0.65 +1.7
183,410 + 11143 mRNA_2775 0.69 +0.0
183,868 + +0.3
183,993 - -0.7
184,277 + 11144 mRNA_2776 0.20 -1.5
184,294 + 11144 mRNA_2776 0.22 +0.9
184,446 + 11144 mRNA_2776 0.32 -0.2
184,585 + 11144 mRNA_2776 0.42 -0.1
184,597 - 11144 mRNA_2776 0.43 +0.0
184,880 + 11144 mRNA_2776 0.63 -1.1
184,883 - 11144 mRNA_2776 0.63 -0.3

Or see this region's nucleotide sequence