Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2802

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11169 and 11170 are separated by 21 nucleotides11170 and 11171 are separated by 176 nucleotides mRNA_2801: 11169 - Hypothetical Protein, at 250,557 to 251,555 11169 mRNA_2802: 11170 - K11309 RTT109, KAT11 regulator of Ty1 transposition protein 109, at 251,577 to 253,280 11170 mRNA_2803: 11171 - K01301 NAALAD N-acetylated-alpha-linked acidic dipeptidase, at 253,457 to 256,700 11171

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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250,601 + -0.2
250,702 + 11169 mRNA_2801 0.15 +0.5
250,726 - 11169 mRNA_2801 0.17 +0.9
250,771 - 11169 mRNA_2801 0.21 +0.8
250,810 + 11169 mRNA_2801 0.25 -0.1
250,893 - 11169 mRNA_2801 0.34 +1.5
250,930 + 11169 mRNA_2801 0.37 -0.5
251,012 - 11169 mRNA_2801 0.46 +1.1
251,057 + 11169 mRNA_2801 0.50 +1.1
251,193 - 11169 mRNA_2801 0.64 +0.8
251,219 - 11169 mRNA_2801 0.66 -0.0
251,384 - 11169 mRNA_2801 0.83 +0.3
251,384 + 11169 mRNA_2801 0.83 +1.2
251,480 - +0.7
251,534 - +2.0
251,588 + +0.8
252,537 - 11170 mRNA_2802 0.56 -1.6
253,355 + +0.5
253,415 + +1.0
253,416 - +0.5
253,506 + +1.6
253,527 - -0.3
253,670 - +1.5
253,680 - +1.2
253,687 + +2.9
253,690 + -0.8
253,698 + +0.9
253,701 + -0.7
254,007 + 11171 mRNA_2803 0.17 -1.5
254,133 - 11171 mRNA_2803 0.21 +2.0
254,165 + 11171 mRNA_2803 0.22 +1.1
254,277 - 11171 mRNA_2803 0.25 +0.6

Or see this region's nucleotide sequence