Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2807

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11175 and 11176 are separated by 334 nucleotides mRNA_2807: 11175 - K11485 MTF2, PCL2 polycomb-like protein 2, at 267,312 to 269,571 11175 mRNA_2808: 11176 - KOG4539 Uncharacterized conserved protein, at 269,906 to 271,117 11176

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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266,432 - +0.0
266,704 - +0.1
266,999 + +1.4
267,533 + -0.1
267,559 - 11175 mRNA_2807 0.11 -0.1
267,573 - 11175 mRNA_2807 0.12 -2.6
268,025 - 11175 mRNA_2807 0.32 +0.7
268,142 - 11175 mRNA_2807 0.37 -0.4
268,322 + 11175 mRNA_2807 0.45 +1.8
268,576 + 11175 mRNA_2807 0.56 +0.7
268,580 + 11175 mRNA_2807 0.56 -0.0
268,592 + 11175 mRNA_2807 0.57 +2.4
268,693 - 11175 mRNA_2807 0.61 +0.5
268,744 - 11175 mRNA_2807 0.63 +0.7
268,890 - 11175 mRNA_2807 0.70 -0.9
269,167 + 11175 mRNA_2807 0.82 -0.8
269,190 + 11175 mRNA_2807 0.83 -0.0
269,315 + 11175 mRNA_2807 0.89 +0.5
269,330 + 11175 mRNA_2807 0.89 +2.6
269,456 + +0.4
269,480 - -0.5
269,489 - +0.1
269,603 - +1.5
269,734 + +0.2
269,759 + +0.3
269,822 + -0.0
269,876 - -0.4
269,879 - +0.1
269,910 + -0.0
269,913 - +0.4
270,045 - 11176 mRNA_2808 0.11 +0.2
270,182 + 11176 mRNA_2808 0.23 +0.2
270,184 - 11176 mRNA_2808 0.23 +0.8
270,206 - 11176 mRNA_2808 0.25 +1.3
270,469 + 11176 mRNA_2808 0.46 +0.8

Or see this region's nucleotide sequence