Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2831

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11198 and 11199 are separated by 314 nucleotides11199 and 11200 are separated by 403 nucleotides mRNA_2830: 11198 - BLAST 60S ribosomal protein L33-A [Wallemia ichthyophag..., at 315,328 to 317,739 11198 mRNA_2831: 11199 - HMMPfam-short chain dehydrogenase-PF00106,PRINTS-Glucose/ribitol dehydrogenase family signature-PR00081,SMART--SM00822,SUPERFAMILY--SSF51735, at 318,054 to 319,183 11199 mRNA_2832: 11200 - KOG1611 Predicted short chain-type dehydrogenase, at 319,587 to 320,810 11200

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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317,213 - 11198 mRNA_2830 0.78 -1.1
317,493 + 11198 mRNA_2830 0.90 -0.1
317,635 + +0.2
318,085 + +2.3
318,275 + 11199 mRNA_2831 0.20 -0.7
318,672 + 11199 mRNA_2831 0.55 +0.4
318,879 - 11199 mRNA_2831 0.73 +0.3
319,034 - 11199 mRNA_2831 0.87 +0.1
319,255 - -0.4
319,302 + +0.5
319,520 - +2.0
319,660 - +0.6
319,846 - 11200 mRNA_2832 0.21 +0.7
320,178 - 11200 mRNA_2832 0.48 -0.0

Or see this region's nucleotide sequence