Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2855

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11222 and 11223 are separated by 598 nucleotides11223 and 11224 are separated by 360 nucleotides mRNA_2854: 11222 - KOG2084 Predicted histone tail methylase containing SET domain, at 371,099 to 373,142 11222 mRNA_2855: 11223 - K10747 LIG1 DNA ligase 1, at 373,741 to 377,451 11223 mRNA_2856: 11224 - K14288 XPOT exportin-T, at 377,812 to 382,012 11224

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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372,781 + 11222 mRNA_2854 0.82 +0.4
372,908 - 11222 mRNA_2854 0.89 +1.1
373,078 - +0.3
373,194 + +0.0
373,210 + -0.9
373,375 - +1.2
373,480 + +0.1
373,537 + -1.8
373,669 - +0.0
373,692 - -0.6
373,819 - +0.1
373,857 + -0.2
377,124 + -0.9
377,439 - +0.2
377,488 - +2.1
377,608 + -0.4
377,707 + +0.8
377,755 - +0.6
377,758 + -0.0
377,763 + +0.1
377,764 + +1.9
377,766 + +0.1

Or see this region's nucleotide sequence