Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2857

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11224 and 11225 are separated by 490 nucleotides11225 and 11226 are separated by 246 nucleotides mRNA_2856: 11224 - K14288 XPOT exportin-T, at 377,812 to 382,012 11224 mRNA_2857: 11225 - K11247 SH3GL endophilin-A, at 382,503 to 383,665 11225 mRNA_2858: 11226 - HMMPfam-Translocon-associated protein (TRAP), alpha subunit-PF03896, at 383,912 to 385,065 11226

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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382,130 + +2.8
382,260 + -0.1
382,396 - +0.1
382,403 + +0.9
382,417 - -0.5
382,548 - +0.6
382,551 - -1.8
382,565 + -1.0
382,838 + 11225 mRNA_2857 0.29 +0.3
382,989 + 11225 mRNA_2857 0.42 +2.1
383,066 + 11225 mRNA_2857 0.48 +0.6
383,095 + 11225 mRNA_2857 0.51 +0.1
383,264 - 11225 mRNA_2857 0.65 +0.1
383,318 + 11225 mRNA_2857 0.70 -1.6
383,734 - -0.2
383,741 + +1.1
383,862 + +1.1
383,885 + -0.7
383,890 + +0.5
384,022 - -0.8
384,022 - -0.3
384,160 - 11226 mRNA_2858 0.21 -1.6
384,278 - 11226 mRNA_2858 0.32 -0.0
384,290 - 11226 mRNA_2858 0.33 -0.1
384,324 + 11226 mRNA_2858 0.36 -0.4
384,599 - 11226 mRNA_2858 0.60 -0.5

Or see this region's nucleotide sequence