Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2868

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11235 and 11236 are separated by 595 nucleotides11236 and 11237 are separated by 514 nucleotides mRNA_2867: 11235 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 403,264 to 404,865 11235 mRNA_2868: 11236 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 405,461 to 407,348 11236 mRNA_2869: 11237 - KOG4170 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes, at 407,863 to 408,924 11237

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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404,502 - 11235 mRNA_2867 0.77 -1.8
404,521 - 11235 mRNA_2867 0.78 -0.3
404,800 + +0.6
404,829 - +2.1
404,835 + +0.9
404,998 - +1.4
405,001 + +1.3
405,009 - -0.1
405,010 + -0.7
405,020 - +0.1
405,028 + +1.3
405,029 - -0.5
405,049 - +1.7
405,077 - +0.7
405,080 + +2.8
405,130 - -0.7
405,143 - -1.2
405,157 + -0.4
405,162 - -1.0
405,167 + -0.4
405,168 - -2.5
405,186 + -0.4
405,202 + +3.9
405,214 - -0.3
405,229 + -1.3
405,241 - -0.9
405,250 - -0.1
405,262 + +0.5
405,266 + +0.1
405,269 + +1.1
405,274 + +1.3
405,341 + -0.3
405,378 - +0.4
405,383 + -1.4
405,394 + -1.0
405,396 + +0.6
405,936 + 11236 mRNA_2868 0.25 +0.8
405,966 + 11236 mRNA_2868 0.27 +2.3
406,227 - 11236 mRNA_2868 0.41 +0.1
406,232 + 11236 mRNA_2868 0.41 -0.5
406,240 - 11236 mRNA_2868 0.41 +2.2
406,269 + 11236 mRNA_2868 0.43 +0.1
406,544 - 11236 mRNA_2868 0.57 +1.5
406,817 + 11236 mRNA_2868 0.72 +2.4
406,837 - 11236 mRNA_2868 0.73 -1.6
406,975 + 11236 mRNA_2868 0.80 +1.2
407,110 - 11236 mRNA_2868 0.87 +0.9
407,142 - 11236 mRNA_2868 0.89 +1.1
407,248 + +3.4
407,253 + -1.2
407,253 + -0.9
407,254 - -0.9
407,269 + +0.7
407,409 - +0.8
407,419 + +0.2
407,434 + -0.3
407,458 + +0.8
407,480 - +0.5
407,482 - +1.3
407,498 - -2.2
407,505 + -0.9
407,537 - -0.1
407,538 - -1.7
407,546 + +1.2
407,549 - -0.6
407,552 - +1.3
407,552 - -0.0
407,552 - +0.0
407,557 + -0.7
407,558 + -0.3
407,570 - +1.1
407,574 - +2.1
407,693 - +0.6
407,699 - +0.9
407,701 + -0.0
407,715 + +1.3
407,718 + +0.6
407,720 + +1.0
407,736 + -2.0
407,840 - -0.6
407,840 - -0.4
407,844 - +2.9
407,844 - -0.8
407,849 + +1.3
407,859 - -1.3
407,864 + +0.2
407,865 - -0.5
407,868 - +0.4
407,877 - +0.8
408,144 + 11237 mRNA_2869 0.26 -0.6

Or see this region's nucleotide sequence