Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2888

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11255 and 11256 are separated by 451 nucleotides11256 and 11257 are separated by 363 nucleotides mRNA_2887: 11255 - K07442 TRM61, GCD14 tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit, at 458,953 to 460,669 11255 mRNA_2888: 11256 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 461,121 to 465,686 11256 mRNA_2889: 11257 - K08184 SLC16A7 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 7, at 466,050 to 468,099 11257

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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460,666 + +2.5
460,673 - +1.2
460,845 - +2.7
460,875 - -0.6
460,939 - +0.8
460,958 - +0.7
460,973 - -0.2
460,975 + -0.9
460,985 - -0.1
460,985 + -0.1
460,998 - -2.0
461,000 + -0.6
461,005 + +0.8
461,019 - +2.3
461,102 - +1.0
461,131 + +0.1
461,131 + -0.3
461,139 - +0.5
461,173 + -1.0
461,231 - +0.7
461,277 - +1.2
461,289 - +1.5
461,318 - +0.3
461,326 + -1.7
461,384 + +2.1
461,411 - -2.4
461,449 - -1.0
461,475 - -1.4
461,595 + 11256 mRNA_2888 0.10 +2.6
461,720 + 11256 mRNA_2888 0.13 +2.9
461,847 + 11256 mRNA_2888 0.16 -1.6
461,986 - 11256 mRNA_2888 0.19 +0.6
462,151 + 11256 mRNA_2888 0.23 +0.3
462,306 - 11256 mRNA_2888 0.26 +1.3
462,318 + 11256 mRNA_2888 0.26 -0.9
462,367 - 11256 mRNA_2888 0.27 +0.0
462,563 - 11256 mRNA_2888 0.32 +0.9
462,682 + 11256 mRNA_2888 0.34 -0.7
462,883 - 11256 mRNA_2888 0.39 +1.4
462,940 + 11256 mRNA_2888 0.40 +0.2
463,043 + 11256 mRNA_2888 0.42 +2.8
463,233 - 11256 mRNA_2888 0.46 +0.4
463,331 + 11256 mRNA_2888 0.48 +1.0
463,377 + 11256 mRNA_2888 0.49 -1.0
463,379 - 11256 mRNA_2888 0.49 +0.5
463,419 + 11256 mRNA_2888 0.50 +1.0
463,482 + 11256 mRNA_2888 0.52 -0.9
463,636 + 11256 mRNA_2888 0.55 -0.4
464,057 - 11256 mRNA_2888 0.64 +2.2
464,215 - 11256 mRNA_2888 0.68 +1.8
464,239 - 11256 mRNA_2888 0.68 -0.6
464,372 - 11256 mRNA_2888 0.71 +1.0
464,373 - 11256 mRNA_2888 0.71 -0.0
464,408 + 11256 mRNA_2888 0.72 +1.7
464,524 + 11256 mRNA_2888 0.75 -0.3
464,598 - 11256 mRNA_2888 0.76 +1.8
464,624 + 11256 mRNA_2888 0.77 +0.0
464,625 - 11256 mRNA_2888 0.77 +0.3
464,780 - 11256 mRNA_2888 0.80 -0.6
464,955 + 11256 mRNA_2888 0.84 +0.7
464,982 - 11256 mRNA_2888 0.85 +1.2
465,112 - 11256 mRNA_2888 0.87 +0.0
465,119 + 11256 mRNA_2888 0.88 +0.8
465,129 + 11256 mRNA_2888 0.88 -0.1
465,154 - 11256 mRNA_2888 0.88 -0.7
465,289 + +2.4
465,571 + -1.5
465,846 - +0.7
465,865 + -0.5
465,933 - -0.7
465,968 - +0.0
465,973 + +1.6
465,982 + -1.3
465,983 - -1.2
465,991 + -0.3
466,133 - +1.8
466,153 - +0.2
466,193 + +0.7
466,270 - 11257 mRNA_2889 0.11 -0.4
466,271 - 11257 mRNA_2889 0.11 -0.3
466,284 + 11257 mRNA_2889 0.11 +0.6

Or see this region's nucleotide sequence