Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2891

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11258 and 11259 are separated by 700 nucleotides11259 and 11260 are separated by 715 nucleotides mRNA_2890: 11258 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 468,371 to 468,835 11258 mRNA_2891: 11259 - Hypothetical Protein, at 469,536 to 470,476 11259 mRNA_2892: 11260 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 471,192 to 473,300 11260

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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468,589 + 11258 mRNA_2890 0.47 +2.0
468,825 + +0.0
469,315 - -1.6
469,336 + +0.9
469,894 + 11259 mRNA_2891 0.38 -0.2

Or see this region's nucleotide sequence