Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2897

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11264 and 11265 are separated by 338 nucleotides11265 and 11266 are separated by 106 nucleotides mRNA_2896: 11264 - KOG3043 Predicted hydrolase related to dienelactone hydrolase, at 478,182 to 479,265 11264 mRNA_2897: 11265 - K12613 DCP2 mRNA-decapping enzyme subunit 2, at 479,604 to 482,899 11265 mRNA_2898: 11266 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 483,006 to 488,500 11266

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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478,659 + 11264 mRNA_2896 0.44 -0.2
479,515 + +0.1
479,520 - -1.4
479,541 - +3.3
479,550 + +1.0
481,964 - 11265 mRNA_2897 0.72 +0.9
481,993 - 11265 mRNA_2897 0.72 +0.5
482,083 - 11265 mRNA_2897 0.75 +1.1
482,400 + 11265 mRNA_2897 0.85 +2.3
482,553 + 11265 mRNA_2897 0.89 -0.1
482,737 + -0.6
482,761 + -0.6
483,214 + -1.3
483,340 + +0.1
483,425 + +0.3
483,430 - +0.1
483,566 - 11266 mRNA_2898 0.10 +0.9
483,572 + 11266 mRNA_2898 0.10 +1.5
483,583 - 11266 mRNA_2898 0.11 -0.5
483,706 + 11266 mRNA_2898 0.13 -1.9

Or see this region's nucleotide sequence