Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2941

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11308 and 11309 are separated by 198 nucleotides11309 and 11310 are separated by 94 nucleotides mRNA_2940: 11308 - SUPERFAMILY--SSF56300, at 604,040 to 607,064 11308 mRNA_2941: 11309 - BLAST IncA domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 607,263 to 608,329 11309 mRNA_2942: 11310 - HMMPfam-VanZ like family-PF04892, at 608,424 to 609,485 11310

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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606,342 - 11308 mRNA_2940 0.76 +0.1
606,590 - 11308 mRNA_2940 0.84 +0.6
606,657 + 11308 mRNA_2940 0.87 +1.7
606,795 - -2.5
607,037 - -3.4
607,152 + +2.0
607,202 + +4.0
607,498 - 11309 mRNA_2941 0.22 +0.2
607,615 - 11309 mRNA_2941 0.33 +0.0
607,649 - 11309 mRNA_2941 0.36 -0.5
607,948 + 11309 mRNA_2941 0.64 +0.5
608,075 - 11309 mRNA_2941 0.76 -0.5
608,093 + 11309 mRNA_2941 0.78 -0.4
608,210 - 11309 mRNA_2941 0.89 +0.4
608,371 + -1.6
608,520 - +0.3
608,524 + +0.9
608,666 - 11310 mRNA_2942 0.23 +0.8
608,814 + 11310 mRNA_2942 0.37 -1.4
609,005 - 11310 mRNA_2942 0.55 +0.8
609,117 - 11310 mRNA_2942 0.65 +0.1
609,216 + 11310 mRNA_2942 0.75 -0.0
609,263 - 11310 mRNA_2942 0.79 -0.3

Or see this region's nucleotide sequence