Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2945

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11312 and 11313 are separated by 257 nucleotides11313 and 11314 are separated by 524 nucleotides mRNA_2944: 11312 - BLAST Putative CigA protein [Rhizopus microsporus], at 614,601 to 617,050 11312 mRNA_2945: 11313 - K15175 CDC73 parafibromin, at 617,308 to 618,975 11313 mRNA_2946: 11314 - SUPERFAMILY--SSF56112, at 619,500 to 621,824 11314

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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616,541 - 11312 mRNA_2944 0.79 +0.0
616,549 - 11312 mRNA_2944 0.80 +0.5
616,565 - 11312 mRNA_2944 0.80 -1.4
616,845 + +1.9
616,851 - +0.4
617,103 - +2.3
617,167 - -0.1
617,178 + -1.5
617,181 + +1.2
617,275 - +1.7
617,327 - +3.0
619,104 - +0.1
619,360 + +0.8
619,363 - +0.1
619,499 - +0.1
619,513 - +1.0
619,525 - -0.5
619,937 + 11314 mRNA_2946 0.19 +0.9
619,937 - 11314 mRNA_2946 0.19 -0.3
619,958 + 11314 mRNA_2946 0.20 +0.6

Or see this region's nucleotide sequence